Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01136 ATGAATAAGTTCGTCGTTTTGATCTGTTTTCATCTCTTTTCTTCTTTCTTCTGCGTTGAAGCACAGTTTGCTTCTGCAAATGAAACTCCAAAATTTCAGCCCAGTCTTGGATTGGTTATTGGCATTCTCTCCGCCATGTTCTTCCTCACCTTTGCTCTTCTCGTCTACGCTAAATTCTGTCACACCCGAGCTTCCAATCTCAACGGACTCCCCGTCCACCATGGATTTCCCAGATCGAGCTCTCGTTTTTCAGGTTTGGACAAAACGATTATCGAATCGCTGCCGTTTTTTCGATTCTCCGCTCTGAAAGGATCCAAACAAGGCCTCGAGTGCGCAGTTTGCTTGTCGAAATTTGAAGATATCGAAATTCTTCGATTGTTGCCGAAATGTAAGCACGCTTTTCACATCGATTGCATCGATCATTGGCTCGAGAAACAGGCGAACTGTCCGCTTTGCAGGCAACGGGTAAGCTCCGAAGACGTGAAAAGCTCCAATTATTCAAACAGCATGAGGTTTTTACTGACCGGTCAGTCGGAACTGAGAGAGGATTCGAATATGGAGTTTTTTGTAGAGAGAGAGGGAGACGATCGAGATCGGAAGTTGTGTTCTTCGAGATTTAGCGTCGGAAATAGCTTCCGGAAGTCGGATAAAACCGGCAACGAAAAGGAAATGCTGATCGAAAAGGTGGATGGTGAAAATGACGACGAACAACAAGTTTTGCACAAACATAATCACAAGATCATCGTGTCGGATTTCGTCTTCAAGAATCGGTGGAGCAATGTCAGCTCTTCCGACCTCATGTTCTTAAACACGGAAATGCTTTCTTCGATCTCAAGCAATAGATTCTCTTCAATGGCCGCCGATCAAACGAAAGTCCAAATCGTTGTCGAAAACGAACAAGTTTTGAAGATCAAGGAGGAGATGGAAATGAAAAGATCATTCGAGAGTAAAGTCAGCAACATCAACTCGAATCTATCGCGTTCGATCGAAAATCATCCTTCTTCATCCAGTTCGAATGAGAATTCGAGAATTATAAACCCAAAAGAGAGAAGATCGGTATCGGAAATCACGGGTCTTTCGAGATTTTCCGATTTACAGACGATCAAGAACCGGCTGGGAAATTCTTGGACGGGGGAAAGTAGTTTGAAGGAAGAGAAAACGAGGCAAATTTGGTATCCAATTGCAAGAAGAACAGTCCAGTGGTTTGCCAACAGAGAGACGAGATCTCGCCAAATCTGA 1239 43.91 MNKFVVLICFHLFSSFFCVEAQFASANETPKFQPSLGLVIGILSAMFFLTFALLVYAKFCHTRASNLNGLPVHHGFPRSSSRFSGLDKTIIESLPFFRFSALKGSKQGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKQANCPLCRQRVSSEDVKSSNYSNSMRFLLTGQSELREDSNMEFFVEREGDDRDRKLCSSRFSVGNSFRKSDKTGNEKEMLIEKVDGENDDEQQVLHKHNHKIIVSDFVFKNRWSNVSSSDLMFLNTEMLSSISSNRFSSMAADQTKVQIVVENEQVLKIKEEMEMKRSFESKVSNINSNLSRSIENHPSSSSSNENSRIINPKERRSVSEITGLSRFSDLQTIKNRLGNSWTGESSLKEEKTRQIWYPIARRTVQWFANRETRSRQI 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42070281 42071519 + Bda032166.1 Bda09g01136 13386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01136 412 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 410 - -
Bda09g01136 412 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 410 - -
Bda09g01136 412 SMART ring_2 111 152 IPR001841 -
Bda09g01136 412 CDD RING-H2_PA-TM-RING 110 153 - -
Bda09g01136 412 MobiDBLite consensus disorder prediction 325 350 - -
Bda09g01136 412 Pfam Ring finger domain 110 153 IPR001841 -
Bda09g01136 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 163 IPR013083 -
Bda09g01136 412 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Bda09g01136 412 SUPERFAMILY RING/U-box 94 158 - -
Bda09g01136 412 MobiDBLite consensus disorder prediction 325 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01247 Bda-Chr7:15321771 Bda09g01136 Bda-Chr9:42070281 4.78E-28 dispersed
Bda09g01136 Bda-Chr9:42070281 Bda06g00018 Bda-Chr6:187212 7.76E-23 dispersed
Bda11g00016 Bda-Chr11:229208 Bda09g01136 Bda-Chr9:42070281 5.87E-15 dispersed
Bda13g00688 Bda-Chr13:7785190 Bda09g01136 Bda-Chr9:42070281 1.42E-19 dispersed
Bda09g01136 Bda-Chr9:42070281 Bda03g00470 Bda-Chr3:4044947 6.72E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01136 K10664 - zju:107431928 458.373