Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01144 ATGGCTTTGTTTGACCCCAGGCAGGCGACAAGCCTGACCCAAACTCCAGAAAAAAGCAGTTATAGAGGTCCTTTAATGGCGAATTCTGATAACCCACCTGGTAGAGGAAAACAAACACCTCCAAAGGATTTTGTATGTCCCATAACTAGCAATTTGTTTGATGATCCAGTGACTCTTGAGACGGGTCAGACGTATGAGCGGAAAGCCATCCGAGAGTGGCTTGACAGAGGAAACGCTACATGTCCAATAACGAGACAGAAGCTACAGAGTTCCCAACTGCCAAAAACAAACTATGTGCTCAAACGGCTTATTGCTAGCTGGAAAGAGGAGAACTCTATTTTGATCTCAAACAGTGCTCAAAATTCTCAAACGATTGAACCACAGATTAAGACCATAGAGCCATTGATTTCTCCTAACAGTGTTTTAAACCAAGTCACCATCGATGGTAATATGAATGAGTTAAGAAGAGCAATCAACCGCCTTACTGCATCAGATATTTTGGAAGAGACAGAATCTGCAGTTCTTTGTATTCAACGAGTATGGCAGGCGAATGTAGAAGATGGTATTAGAGTTATGCTTTCAAAGGCTCCAGTCATCAATGGGTTTGTAGAGACCCTTTTCAATTCTGTTGATCCTCAAGTGCTAGAAGCAACTATTTTTCTCCTTTCAGAGCTGGGGTCTAAAGAGAAGGCCGTTATTCAAACTCTTACCAGGGTTGAGTCTGATGTGGATTGTTTTGTGGCTCTTTTCAAAAAGGGGTTACTGGAGTCTGTTGTTCTGATCTATCTTTTAGGACCTTCCCCCATGAGTCTAATTGAGATGGACATGGCGGATTCTCTGTTGAAAGTTATTAAGAAGAGAGAAGAAGACTCGCGTGCGATGCATTTGAAACCCCGAACTGCTGCTGTAATTTTATTGGGGCTGATTCTTGGAAACTGTGAGGACAATCATCTCTCTTCAATTGTCAATGCTATAATATCTGAAAGGGCAATTGAAAGTATTGTTGGTAGTCTAGAAGCAGATTGGGCAGAAGAGAAGATTTCAGCGGTTGGGATATTACTGAGATGCATCCGAAAGGATGGAAAATGCAGAAACGTTATCGCTGATAATGCAGAATTGGGTCCTGTTTTGGAATGTTTTATGAGTGCAAGTGATGAAGAAAGATATGAGATAGTACAGTTTCTTTCCGAGTTAGTCAAGTTAAATAGGAGGACTTCCAATGAGCAAATTCTCCATATCATAAAGGATGAAGGTTACTACAGTACAATGCACGCACTTTTGATGTATTTACAGACTGCCAATCTAGATCAAAGTCCAGTTGTGGCGGGTCTGCTTTTACAGCTAGATCTTCTGACCGAGCCAAGAAAAATGAGCATATACCGTGAAGAGGCAATAGATGCTCTCATTTCATGCCTCAGAAATTCAAACCACCTTAGTGGCCAAGTCACTGCAGCTGAGACAATTATGTCTTTACAAGGCAGATTTTGCTCCTCGGGAAAGTCTATTACTAGGGCTTTTCTTCTTAAACGTGCTGGACTTGACAAGAGTTACAAGAAGCTGATGCGAAGAGAAAATCCCAGCAATGGCCCTGGGGAAGTAAAAGAAACTGCAGAAGAAGAGAAGGTAGCTGATGAATGGGAAAGCAAAATGGCATTTGTTCTAGTGAATCATGAATTTGGTTTGCTGTTTGAGGCTTTGGTCGATGGCCTCAAGAGCAAATATGAGGCATTTTATTCAGCATCCTTTGTCTCAGCTACATGGCTCACATATATGCTTAAATTTCTTCCTGATACCGGCGTACAAGGGGCTGCTCGAGTCTGCTTGCTTAAGCCCTTCATATCAGTATTCACATCTACAAAGGATACTGAAGACAAAATGCTTGCTTTGCTGGCTATAAACAGTTTTATCCGAGACCCTGAAGGGGTGCAGGAAATTACTCCCTACTTGAAAGATATTATGAGAGGTCTTAGAGAACTTAAAAAATCTTCACCCTTGGCTTCTGAAATGCAAAAAGTTCTTTCAGATGGACATGACTCTAGCACTGAATTGTGGAGCCATAAAGAGTTAGTTCAAGTAGACTGTAGCGAGAATGGAGAAGTGCTTTCTCTTGTTTACTACAAAGACAAGATTTTTTCTGGCCATTCAGATGGAACTATCAAGGTCTGGACTGGTAGAGGTAGCATTCTTCATCTTGTACAAGAAATCCAAGAGCACTCCAAAGCAGTCATGAGCTTAGCTGTTTCGGAATCGGCAGAGATATTATACAGCGGTTCACTTGATAGAACAGTGAAGGTCTGGTCCATTGGAGATGATATCGTCAATTTGTTACAAGTTCATGATTTGAAGGATCAGGTTCATCATATGGTCATCGCCAAGAGTCTCGTGTGCTTCATTCCACACGGGGCTGGCGTTAAGGTTCATTCACTAGAAGGAGAATCTAAACTATTGAATGCAAGCAAATACGCCAAGTGCTTGGCTCTCCAAAGAGGAAAACTATACTGCGGATGCCATGATAATAGTATTCAGGAAATCGATTTGGCTACAGGAACATTATGCTCAATTCAAAATGGTTCAAGAAAACTGTTGGGAAAATCAAATCCTGTTCAAGCTCTAGAAGTTCACGATGGACTTTTATATTCAGCCAGCTGTTCCTTGGATGGAGCAGCCGTGAAGATTTGGGATGCATCAAATCACAACCTTATCGGATCTTTCCCAACCGTCGTCGGATGTGCGGAGAATGGCCATAAGCTCAGATCTGGTTTATTTAGGGTGCAAGGGAGGAAGTGTGGAAATTTGGAGCAGAGAGAAGCAAAATAG 2817 41.89 MALFDPRQATSLTQTPEKSSYRGPLMANSDNPPGRGKQTPPKDFVCPITSNLFDDPVTLETGQTYERKAIREWLDRGNATCPITRQKLQSSQLPKTNYVLKRLIASWKEENSILISNSAQNSQTIEPQIKTIEPLISPNSVLNQVTIDGNMNELRRAINRLTASDILEETESAVLCIQRVWQANVEDGIRVMLSKAPVINGFVETLFNSVDPQVLEATIFLLSELGSKEKAVIQTLTRVESDVDCFVALFKKGLLESVVLIYLLGPSPMSLIEMDMADSLLKVIKKREEDSRAMHLKPRTAAVILLGLILGNCEDNHLSSIVNAIISERAIESIVGSLEADWAEEKISAVGILLRCIRKDGKCRNVIADNAELGPVLECFMSASDEERYEIVQFLSELVKLNRRTSNEQILHIIKDEGYYSTMHALLMYLQTANLDQSPVVAGLLLQLDLLTEPRKMSIYREEAIDALISCLRNSNHLSGQVTAAETIMSLQGRFCSSGKSITRAFLLKRAGLDKSYKKLMRRENPSNGPGEVKETAEEEKVADEWESKMAFVLVNHEFGLLFEALVDGLKSKYEAFYSASFVSATWLTYMLKFLPDTGVQGAARVCLLKPFISVFTSTKDTEDKMLALLAINSFIRDPEGVQEITPYLKDIMRGLRELKKSSPLASEMQKVLSDGHDSSTELWSHKELVQVDCSENGEVLSLVYYKDKIFSGHSDGTIKVWTGRGSILHLVQEIQEHSKAVMSLAVSESAEILYSGSLDRTVKVWSIGDDIVNLLQVHDLKDQVHHMVIAKSLVCFIPHGAGVKVHSLEGESKLLNASKYAKCLALQRGKLYCGCHDNSIQEIDLATGTLCSIQNGSRKLLGKSNPVQALEVHDGLLYSASCSLDGAAVKIWDASNHNLIGSFPTVVGCAENGHKLRSGLFRVQGRKCGNLEQREAK 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42193131 42197784 + Bda032175.1 Bda09g01144 13394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01144 938 Pfam U-box domain 41 112 IPR003613 GO:0004842|GO:0016567
Bda09g01144 938 SMART WD40_4 728 767 IPR001680 GO:0005515
Bda09g01144 938 SMART WD40_4 854 894 IPR001680 GO:0005515
Bda09g01144 938 SMART WD40_4 802 845 IPR001680 GO:0005515
Bda09g01144 938 SMART WD40_4 686 723 IPR001680 GO:0005515
Bda09g01144 938 MobiDBLite consensus disorder prediction 1 42 - -
Bda09g01144 938 SUPERFAMILY RING/U-box 34 114 - -
Bda09g01144 938 SUPERFAMILY ARM repeat 141 658 IPR016024 -
Bda09g01144 938 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 124 IPR013083 -
Bda09g01144 938 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 907 - -
Bda09g01144 938 Gene3D - 154 527 IPR011989 -
Bda09g01144 938 CDD RING-Ubox_PUB 44 86 IPR045210 -
Bda09g01144 938 Gene3D - 826 923 IPR015943 GO:0005515
Bda09g01144 938 ProSiteProfiles U-box domain profile. 39 114 IPR003613 GO:0004842|GO:0016567
Bda09g01144 938 ProSiteProfiles Trp-Asp (WD) repeats profile. 735 768 IPR001680 GO:0005515
Bda09g01144 938 Gene3D - 657 825 IPR015943 GO:0005515
Bda09g01144 938 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 907 - -
Bda09g01144 938 SMART Ubox_2 43 107 IPR003613 GO:0004842|GO:0016567
Bda09g01144 938 MobiDBLite consensus disorder prediction 7 26 - -
Bda09g01144 938 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 735 768 - -
Bda09g01144 938 Pfam WD domain, G-beta repeat 732 767 IPR001680 GO:0005515
Bda09g01144 938 SUPERFAMILY WD40 repeat-like 688 905 IPR036322 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01881 Bda09g01144 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00480 Bda-Chr1:31873021 Bda09g01144 Bda-Chr9:42193131 0 dispersed
Bda07g00879 Bda-Chr7:10250826 Bda09g01144 Bda-Chr9:42193131 4.22E-42 dispersed
Bda08g00295 Bda-Chr8:3086982 Bda09g01144 Bda-Chr9:42193131 9.22E-69 dispersed
Bda09g01144 Bda-Chr9:42193131 Bda07g00590 Bda-Chr7:7230889 2.50E-18 dispersed
Bda09g01144 Bda-Chr9:42193131 Bda09g00289 Bda-Chr9:3560169 1.44E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01144 - - mesc:110604262 1224.15