Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01189 ATGGCTTCTTATTCAGCCAATAGTCAGGCTGATGACCAGCAAAAACACTCTGAATCTGAGAACCGGTCTTCATCTCCACCGACTGGAGTGTCTCATCATGGCATTTTAAATCCAAATCAGTATACAATGCCTTCGCAACTTGGAATGGGTCATGCGATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTCCCCAGCCTTATGGTGGACAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAATTTTTGAAGTCTAGGAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGGGGTAGGTTTCTGAAGGCGAAGGAAAACGAGAACCAATCAAATGAGGTGATGTCACGAGACGAATCACAAACCAACTTAAACCTTAACAACAACAAAAACAATCCTGCTTCCTCGGATAGTGCTTCCCAATAA 615 45.2 MASYSANSQADDQQKHSESENRSSSPPTGVSHHGILNPNQYTMPSQLGMGHAMAPSTYPYHDPYYRSIFAPYDGQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKFLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNEVMSRDESQTNLNLNNNKNNPASSDSASQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42826984 42828441 - Bda032235.1 Bda09g01189 13439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01189 204 Gene3D - 107 169 - -
Bda09g01189 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 MobiDBLite consensus disorder prediction 162 204 - -
Bda09g01189 204 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 MobiDBLite consensus disorder prediction 1 43 - -
Bda09g01189 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 186 - -
Bda09g01189 204 MobiDBLite consensus disorder prediction 177 204 - -
Bda09g01189 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 186 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 MobiDBLite consensus disorder prediction 20 43 - -
Bda09g01189 204 MobiDBLite consensus disorder prediction 162 176 - -
Bda09g01189 204 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01189 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 293.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00657 Bda-Chr3:5591293 Bda09g01189 Bda-Chr9:42826984 1.88E-24 dispersed
Bda03g01624 Bda-Chr3:55557333 Bda09g01189 Bda-Chr9:42826984 3.73E-20 dispersed
Bda03g00593 Bda-Chr3:4929773 Bda09g01189 Bda-Chr9:42826984 1.65E-32 transposed
Bda09g00320 Bda-Chr9:4086209 Bda09g01189 Bda-Chr9:42826984 6.51E-32 transposed
Bda11g01030 Bda-Chr11:10015592 Bda09g01189 Bda-Chr9:42826984 1.73E-16 transposed
Bda12g00605 Bda-Chr12:20651392 Bda09g01189 Bda-Chr9:42826984 3.94E-32 transposed
Bda09g01353 Bda-Chr9:45323441 Bda09g01189 Bda-Chr9:42826984 2.07E-33 transposed
Bda02g00473 Bda-Chr2:45632114 Bda09g01189 Bda-Chr9:42826984 3.44E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda02g00473 . 16 127 CCAAT-HAP2 Transcription Factor Family AT2G34720 68.1 3.5e-38 154.8
Bda09g01189 . 5 171 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.6 1.7e-44 176.0
Bda02g00473 . 6 129 CCAAT-HAP2 Transcription Factor Family AT1G30500 70.3 2.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16428 PF02045 CBFB_NFYA 3.70E-26 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g01189 Bda_Chr09 FPKM 3.548646 3.781306 3.798624 4.793525 12.632094 11.42869 14.023027 6.401136 6.790586