Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01189 ATGGCTTCTTATTCAGCCAATAGTCAGGCTGATGACCAGCAAAAACACTCTGAATCTGAGAACCGGTCTTCATCTCCACCGACTGGAGTGTCTCATCATGGCATTTTAAATCCAAATCAGTATACAATGCCTTCGCAACTTGGAATGGGTCATGCGATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTCCCCAGCCTTATGGTGGACAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAATTTTTGAAGTCTAGGAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGGGGTAGGTTTCTGAAGGCGAAGGAAAACGAGAACCAATCAAATGAGGTGATGTCACGAGACGAATCACAAACCAACTTAAACCTTAACAACAACAAAAACAATCCTGCTTCCTCGGATAGTGCTTCCCAATAA 615 45.2 MASYSANSQADDQQKHSESENRSSSPPTGVSHHGILNPNQYTMPSQLGMGHAMAPSTYPYHDPYYRSIFAPYDGQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKFLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNEVMSRDESQTNLNLNNNKNNPASSDSASQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42826984 42828441 - Bda032235.1 Bda09g01189 13439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01189 204 Gene3D - 107 169 - -
Bda09g01189 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 MobiDBLite consensus disorder prediction 162 204 - -
Bda09g01189 204 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 MobiDBLite consensus disorder prediction 1 43 - -
Bda09g01189 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 186 - -
Bda09g01189 204 MobiDBLite consensus disorder prediction 177 204 - -
Bda09g01189 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 186 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
Bda09g01189 204 MobiDBLite consensus disorder prediction 20 43 - -
Bda09g01189 204 MobiDBLite consensus disorder prediction 162 176 - -
Bda09g01189 204 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00657 Bda-Chr3:5591293 Bda09g01189 Bda-Chr9:42826984 1.88E-24 dispersed
Bda03g01624 Bda-Chr3:55557333 Bda09g01189 Bda-Chr9:42826984 3.73E-20 dispersed
Bda03g00593 Bda-Chr3:4929773 Bda09g01189 Bda-Chr9:42826984 1.65E-32 transposed
Bda09g00320 Bda-Chr9:4086209 Bda09g01189 Bda-Chr9:42826984 6.51E-32 transposed
Bda11g01030 Bda-Chr11:10015592 Bda09g01189 Bda-Chr9:42826984 1.73E-16 transposed
Bda12g00605 Bda-Chr12:20651392 Bda09g01189 Bda-Chr9:42826984 3.94E-32 transposed
Bda09g01353 Bda-Chr9:45323441 Bda09g01189 Bda-Chr9:42826984 2.07E-33 transposed
Bda02g00473 Bda-Chr2:45632114 Bda09g01189 Bda-Chr9:42826984 3.44E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16428 PF02045 CBFB_NFYA 3.70E-26 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01189 K08064 - jre:109011209 293.508