Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g01189 | ATGGCTTCTTATTCAGCCAATAGTCAGGCTGATGACCAGCAAAAACACTCTGAATCTGAGAACCGGTCTTCATCTCCACCGACTGGAGTGTCTCATCATGGCATTTTAAATCCAAATCAGTATACAATGCCTTCGCAACTTGGAATGGGTCATGCGATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTCCCCAGCCTTATGGTGGACAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAATTTTTGAAGTCTAGGAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGGGGTAGGTTTCTGAAGGCGAAGGAAAACGAGAACCAATCAAATGAGGTGATGTCACGAGACGAATCACAAACCAACTTAAACCTTAACAACAACAAAAACAATCCTGCTTCCTCGGATAGTGCTTCCCAATAA | 615 | 45.2 | MASYSANSQADDQQKHSESENRSSSPPTGVSHHGILNPNQYTMPSQLGMGHAMAPSTYPYHDPYYRSIFAPYDGQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKFLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNEVMSRDESQTNLNLNNNKNNPASSDSASQ | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 42826984 | 42828441 | - | Bda032235.1 | Bda09g01189 | 13439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g01189 | 204 | Gene3D | - | 107 | 169 | - | - | |
Bda09g01189 | 204 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 109 | 164 | IPR001289 | GO:0003700|GO:0006355 | |
Bda09g01189 | 204 | MobiDBLite | consensus disorder prediction | 162 | 204 | - | - | |
Bda09g01189 | 204 | PRINTS | CCAAT-binding transcription factor subunit B signature | 141 | 164 | IPR001289 | GO:0003700|GO:0006355 | |
Bda09g01189 | 204 | PRINTS | CCAAT-binding transcription factor subunit B signature | 110 | 132 | IPR001289 | GO:0003700|GO:0006355 | |
Bda09g01189 | 204 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Bda09g01189 | 204 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 4 | 186 | - | - | |
Bda09g01189 | 204 | MobiDBLite | consensus disorder prediction | 177 | 204 | - | - | |
Bda09g01189 | 204 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 4 | 186 | IPR001289 | GO:0003700|GO:0006355 | |
Bda09g01189 | 204 | ProSiteProfiles | NF-YA/HAP2 family profile. | 107 | 167 | IPR001289 | GO:0003700|GO:0006355 | |
Bda09g01189 | 204 | SMART | cbf3 | 106 | 167 | IPR001289 | GO:0003700|GO:0006355 | |
Bda09g01189 | 204 | MobiDBLite | consensus disorder prediction | 20 | 43 | - | - | |
Bda09g01189 | 204 | MobiDBLite | consensus disorder prediction | 162 | 176 | - | - | |
Bda09g01189 | 204 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 112 | 132 | IPR018362 | GO:0003677|GO:0016602 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00657 | Bda-Chr3:5591293 | Bda09g01189 | Bda-Chr9:42826984 | 1.88E-24 | dispersed | |
Bda03g01624 | Bda-Chr3:55557333 | Bda09g01189 | Bda-Chr9:42826984 | 3.73E-20 | dispersed | |
Bda03g00593 | Bda-Chr3:4929773 | Bda09g01189 | Bda-Chr9:42826984 | 1.65E-32 | transposed | |
Bda09g00320 | Bda-Chr9:4086209 | Bda09g01189 | Bda-Chr9:42826984 | 6.51E-32 | transposed | |
Bda11g01030 | Bda-Chr11:10015592 | Bda09g01189 | Bda-Chr9:42826984 | 1.73E-16 | transposed | |
Bda12g00605 | Bda-Chr12:20651392 | Bda09g01189 | Bda-Chr9:42826984 | 3.94E-32 | transposed | |
Bda09g01353 | Bda-Chr9:45323441 | Bda09g01189 | Bda-Chr9:42826984 | 2.07E-33 | transposed | |
Bda02g00473 | Bda-Chr2:45632114 | Bda09g01189 | Bda-Chr9:42826984 | 3.44E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16428 | PF02045 | CBFB_NFYA | 3.70E-26 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g01189 | K08064 | - | jre:109011209 | 293.508 |