Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01192 ATGCTTATTTGTGCAGCTAAAAGAAGGTTAAAAGAGTTGTTGCTTCAGCAAGATAATCGCTTTTGTGCAGACTGTCATGCTCCAGATCCTAAATGGGCGTCAGCTAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTTCACAGGAGCCTTGGTACTCATATATCAAAGGTACTGTCTATAACGTTGGATGATTGGTCTGATGAGGAAATCGATGCCATGACTGAGGTTGGAGGAAATGCTTCTGCTAATGCTATATATGAAGCTTTTATTCCTGAAGGATATTCAAAACCAGGGCCGGATGCTAGCCATGAAGATCGTTCAAAATACATCCGGTCTAAATATGAGCGCCAAGAATTTTTGAAACCTAGTTTGCGAATTTTGTCAACAAACTCAGCAAAGAGTTCTCTACAAACAAGTTTTTCTAGAAAGATGATGGATAGTTTTCGCAGTACAAATTCTTCTCTGAAATTGGAAGGCATGGTAGAATTCATTGGATTACTGAAAGTAAAAGTAATTAAAGGCACAAATTTGGCCATCAGGGATATGATGTCAAGCGACCCTTATGTTGTCTTGACTATTGGGAACCAGACTGCTCAGACTACCGTGAAAAAGAGCGACTTGAATCCCATCTGGAACGAGGAACTCATGCTGTCAGTGCCTCAGGATTTTGGTCCCCTAAAATTGCGGGTGTTCGACCACGATACATTTTCGGCAGATGATATCATGGGAGAGGCAGAGATTGACCTGCAACCGATGATAACATCAGCCATGGCATTTGGAGATGCAGGAATGTTTGGAAATATGCAGATTGGAAAATGGCTGAAATCTCATGATAATGCTCTCAAAGAGGATAGCACTGTCAATATCATTGATGGCAAAGTTAAACAGGAGGTTTTACTCAAGCTTCAGAATGTGGAATCAGGAGATATAGATCTTGAGCTCGAATGGATGCCTCTTGATCAATAG 972 40.53 MLICAAKRRLKELLLQQDNRFCADCHAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSITLDDWSDEEIDAMTEVGGNASANAIYEAFIPEGYSKPGPDASHEDRSKYIRSKYERQEFLKPSLRILSTNSAKSSLQTSFSRKMMDSFRSTNSSLKLEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLTIGNQTAQTTVKKSDLNPIWNEELMLSVPQDFGPLKLRVFDHDTFSADDIMGEAEIDLQPMITSAMAFGDAGMFGNMQIGKWLKSHDNALKEDSTVNIIDGKVKQEVLLKLQNVESGDIDLELEWMPLDQ 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42845842 42849227 + Bda032238.1 Bda09g01192 13442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01192 323 SUPERFAMILY ArfGap/RecO-like zinc finger 7 124 IPR037278 -
Bda09g01192 323 CDD C2_ArfGAP 166 310 - -
Bda09g01192 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 5 323 - -
Bda09g01192 323 SMART arf_gap_3 7 129 IPR001164 GO:0005096
Bda09g01192 323 Gene3D C2 domain 165 323 IPR035892 -
Bda09g01192 323 SMART C2_3c 168 263 IPR000008 -
Bda09g01192 323 ProSiteProfiles C2 domain profile. 149 264 IPR000008 -
Bda09g01192 323 CDD ArfGap 10 116 - -
Bda09g01192 323 ProSiteProfiles ARF GTPase-activating proteins domain profile. 7 135 IPR001164 GO:0005096
Bda09g01192 323 Gene3D Arf GTPase activating protein 4 127 IPR038508 -
Bda09g01192 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 5 323 IPR044518 GO:0005096|GO:0005543
Bda09g01192 323 Pfam C2 domain 167 256 IPR000008 -
Bda09g01192 323 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 167 315 IPR035892 -
Bda09g01192 323 Pfam Putative GTPase activating protein for Arf 8 123 IPR001164 GO:0005096
Bda09g01192 323 PRINTS HIV Rev interacting protein signature 19 38 IPR001164 GO:0005096
Bda09g01192 323 PRINTS HIV Rev interacting protein signature 38 55 IPR001164 GO:0005096
Bda09g01192 323 PRINTS HIV Rev interacting protein signature 59 80 IPR001164 GO:0005096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00475 Bda09g01192 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01192 Bda-Chr9:42845842 Bda14g00438 Bda-Chr14:3150773 2.83E-115 dispersed
Bda09g00364 Bda-Chr9:4654891 Bda09g01192 Bda-Chr9:42845842 1.07E-26 transposed
Bda02g00475 Bda-Chr2:45647532 Bda09g01192 Bda-Chr9:42845842 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01192 K12486 - zju:107406254 565.074