Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01238 ATGGGTGGCCTGATCGATCTGAACACGGCCGACGACGATGACACTCCTGGTTCACCTGCTTCGTCTCCATCTGCTTCTGGTTTTTCTTCTTCTTCGGCTTCTATTTGCTTGGAGTTATGGCACGCCTGCGCTGGTCCAGTTATTTCACTGCCGAAGAAAGGCAGTGTGGTCGTGTATTTGCCGCAAGCTCACTTGGAAATGGTCCAAGATTTTCCCATTACCGCCATTGATCTTCCTCCTCACATCTTCTGTCGTGTTCTCGATGTTCAACTCCATGCAGAGGCGGGTACTGATCAGGTTCACGCTCGAGTTTCTCTAATTCCTGAAAGTCAGAACTTTGAGCAGCAACTGCAAGAAGGGGAAATCGATGCCGATGGCAGCGAAGACGATTTCGAAGCGGCAGTGAAGTCGACAACGCCTCATATGTTCTGCAAGACTCTCACTGCTTCAGACACCAGCACTCACGGCGGGTTCTCTGTCCCTCGCCGAGCCGCCGAAGATTGCTTTCCTGCGTTGGACTATAATCAACAGAGGCCTTCACAAGAGCTCATGGCGAAGGATCTTCACGGGTTGGAATGGCGGTTCCGACACATTTATCGAGGTGAAACAGCCACCGGAGTTTCACCTAAATCTTGTGAATTTTCAGGGCAGCCAAGAAGACATTTGCTCACGACTGGATGGAGTGCATTTGTAAACAAGAAAAAGCTGACCTCCGGCGACGCAGTCCTGTTTCTTAGGGGTGAAGATGGTGACTTGAGACTCGGAATTAGAAGAGCATCTCAGGTCAAAATCGGGTCTCCTCTTCCCGGTTTGTGCAGCCAGCAGCCAAGCCCCTGCAATCTTCGAAATGTCATTGATTCTATATGGACGAGAAGTGTATTCAGTGTTCGATGCAATCCAAGGACCGGTTTTTCAGAGTTCATTATACCTCTGCCTAGATTTTTGAAGAGCATTAACCAATCTTTCTCTATCGGGACGATGTTTAAGCTGTGTTTCGAGACAGAGGATGCTGCAGAACGAAGGGTTTCGAGAAATGTTGTCTTGGAATATTGCATGAACGAGTCGGTTTTCATTCTTGGCAGATGCACAGGTCGAATAGCCGGAATTAGCGACGTGGATCCAATGAGATGGCCTGGCTCTAAGTGGAGATGTTTAGTGGTGAGGTGGGACGAAGCGGAAACTAATAGACATGGCAGGGTTTCTCCATGGGAGATCGAGCCATCTGGTTCTCCTTGTGGATCGAACGGCTTGGTCATACCTGGTTTGAAGAGGACCAGGAGCAAATTGTCTTCGGACAAAACCGAGTTTCCGATTCCTAATGGGATCGGGCAATCAGACTTTGAGGAATCTCTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCGGGTTTTGATCTTTCGTTCGATGGTTTAAGAAATAAAAATCAACGATCATCCGAAAGAAGGATGTTTTCTTCTCAAAGCATAGGCATTCCGGAGTCTCGTGGATTTCCGAAGCTCTTGCAAGGTCAAGAAATATTTTCGAGCCGTCCATACCGAACAACCGCACTGACTCCCGACGAGGCTCGAGATAACGGTGGACGATTAATCTTCAATGGTGTTCGAGTTCCTAACTCTAAACACGGATGGCCTCTCTCGATGCATGGTTCGAATTCGGACAAGCGAGTATCATCTTCGACTGCTCAGGTGTCTTCGCCATCTTCTGTGTTGTTGTTTCAACAAGCAATCAATCTAGCTCCAGCCTATAGTTCAGTCTACAACAATGGAAAAGGTTCTCACCTTACAAACGGTGCAAAGTTATCGTCTTTCTCCGATAATCGATTAAGAAAAGCAGTCCAGTCGGAGGTTGATGATCAACTAGCTCAACCCGGATCGAGTTTTGGCGGAAATCTGAGCAAAACGAACTGCAGGCTATTCGGGTTTTCCTTAACAGAAGGAAAGCAGGTTTCACAAATGGAAAAGGCCTTCAATGCCATCCAAAACCTCCATTGGTGA 1998 47.6 MGGLIDLNTADDDDTPGSPASSPSASGFSSSSASICLELWHACAGPVISLPKKGSVVVYLPQAHLEMVQDFPITAIDLPPHIFCRVLDVQLHAEAGTDQVHARVSLIPESQNFEQQLQEGEIDADGSEDDFEAAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPALDYNQQRPSQELMAKDLHGLEWRFRHIYRGETATGVSPKSCEFSGQPRRHLLTTGWSAFVNKKKLTSGDAVLFLRGEDGDLRLGIRRASQVKIGSPLPGLCSQQPSPCNLRNVIDSIWTRSVFSVRCNPRTGFSEFIIPLPRFLKSINQSFSIGTMFKLCFETEDAAERRVSRNVVLEYCMNESVFILGRCTGRIAGISDVDPMRWPGSKWRCLVVRWDEAETNRHGRVSPWEIEPSGSPCGSNGLVIPGLKRTRSKLSSDKTEFPIPNGIGQSDFEESLRFQKVLQGQEISGFDLSFDGLRNKNQRSSERRMFSSQSIGIPESRGFPKLLQGQEIFSSRPYRTTALTPDEARDNGGRLIFNGVRVPNSKHGWPLSMHGSNSDKRVSSSTAQVSSPSSVLLFQQAINLAPAYSSVYNNGKGSHLTNGAKLSSFSDNRLRKAVQSEVDDQLAQPGSSFGGNLSKTNCRLFGFSLTEGKQVSQMEKAFNAIQNLHW 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43825008 43828503 - Bda032302.2 Bda09g01238 13488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01238 665 CDD B3_DNA 141 258 IPR003340 GO:0003677
Bda09g01238 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 655 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda09g01238 665 Pfam B3 DNA binding domain 143 259 IPR003340 GO:0003677
Bda09g01238 665 SMART B3_2 143 260 IPR003340 GO:0003677
Bda09g01238 665 MobiDBLite consensus disorder prediction 1 26 - -
Bda09g01238 665 Pfam Auxin response factor 287 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda09g01238 665 Gene3D - 141 259 IPR015300 -
Bda09g01238 665 ProSiteProfiles B3 DNA-binding domain profile. 143 260 IPR003340 GO:0003677
Bda09g01238 665 Gene3D - 321 413 - -
Bda09g01238 665 SUPERFAMILY DNA-binding pseudobarrel domain 136 259 IPR015300 -
Bda09g01238 665 PANTHER AUXIN RESPONSE FACTOR 3 26 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00507 Bda-Chr2:45982922 Bda09g01238 Bda-Chr9:43825008 0 dispersed
Bda09g01238 Bda-Chr9:43825008 Bda11g01574 Bda-Chr11:48941667 6.51E-105 dispersed
Bda09g01469 Bda-Chr9:46511418 Bda09g01238 Bda-Chr9:43825008 2.15E-12 dispersed
Bda11g00123 Bda-Chr11:1687260 Bda09g01238 Bda-Chr9:43825008 5.29E-34 dispersed
Bda09g01238 Bda-Chr9:43825008 Bda02g00770 Bda-Chr2:48437939 2.78E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16432 PF02362 B3 1.30E-17 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01238 K14486 - zju:107412017 697.582