Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01248 ATGGCAGCGACAAAAGAAGGAAAGAGGAGGTACGAGAAAATGGAGGAAGAAGAGGAGGAGGAGGAAGAAGAAGAAGACGATGCAGGTGAATTAGGGTTTTTAGAGGATGACAGGAAGAAGAAAGCCATGTTTACTGCTTCGACCTCTTCAAAGAAAGGTTCAGCAAGTGCAGGCGGATCGACAGCGTCGTATTGTCAGGCTGATAATTGTACTGCCGATCTGAAAGATGCCAAACGCTACTATAAACGGCACAAGGTCTGTGAGTTCCACGCTAAGGCTGTCACGGCCTTCGTTGCGGGTCTCCGGCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCACGAGTTATCGGAGTTTGACGACTCGAAGAGAAGTTGCAGAAGCCGTTTGGCCGGACACAACGAACGGCGGAGGAGAAACTTGACGGAGATTCATGGAGATGGCTCTACCTGA 450 49.78 MAATKEGKRRYEKMEEEEEEEEEEEDDAGELGFLEDDRKKKAMFTASTSSKKGSASAGGSTASYCQADNCTADLKDAKRYYKRHKVCEFHAKAVTAFVAGLRQRFCQQCSRFHELSEFDDSKRSCRSRLAGHNERRRRNLTEIHGDGST 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43919626 43920800 - Bda032313.1 Bda09g01248 13498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01248 149 MobiDBLite consensus disorder prediction 16 31 - -
Bda09g01248 149 SUPERFAMILY SBT domain 64 142 IPR036893 GO:0003677|GO:0005634
Bda09g01248 149 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Bda09g01248 149 MobiDBLite consensus disorder prediction 1 36 - -
Bda09g01248 149 MobiDBLite consensus disorder prediction 1 15 - -
Bda09g01248 149 Pfam SBP domain 65 138 IPR004333 GO:0003677
Bda09g01248 149 Coils Coil 1 31 - -
Bda09g01248 149 PIRSF SBP 1 149 IPR017238 GO:0003677|GO:0003700|GO:0009908
Bda09g01248 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 142 - -
Bda09g01248 149 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Bda09g01248 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 142 IPR044817 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00989 Bda09g01248 CCT
Bda07g00989 Bda09g01248 ECH
Bda02g00522 Bda09g01248 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01248 Bda-Chr9:43919626 Bda14g00764 Bda-Chr14:5842872 5.02E-36 dispersed
Bda13g00670 Bda-Chr13:7631673 Bda09g01248 Bda-Chr9:43919626 9.54E-23 dispersed
Bda09g00515 Bda-Chr9:6825956 Bda09g01248 Bda-Chr9:43919626 2.67E-39 transposed
Bda02g00522 Bda-Chr2:46080039 Bda09g01248 Bda-Chr9:43919626 1.48E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16433 PF03110 SBP 2.90E-30 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01248 - - vvi:100250271 160.999