Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01276 ATGAACGATCTGTTCTCTAACTCTTTCAAAAAATACGCCGACCTGAAGCAGCAGGCGTACGAAGACGGAATGGAGGCAGGAAACGAGACTGTAGATCTCGACAAATTCTTTGAAGACGTTGAGAATGTGAAGGAAGACATGAAACAGGTGGAAAAGCTCTACAAGAGACTGCAAGAAGCAAATGAAGAAAGCAAAGTAGTTCACAACGCCAAAACCATGAAAGAATTGAGAGCAAGAATGGATCAAGATGTCAGCCAGGTCTTAAGAAGAGTCAAAGTGATCAAAGGAAAGCTCGAAGCTCTCGATCGATCGAACGCATCTCATCGGAGCCTTCCCGGGTGCGGTCCCGGCTCGTCTGCCGATAGAACAAGAACCTCAGTGGTGAGTGGATTGGGGAAGAAACTTAAAGACACCATGGATGATTTTCAGAGCTTAAGAGCTAGAATGAATGCCGAATACAAGGAAACAGTAGAACGCAGGTATTTCACAATCACAGGAGAGAAGGCAAATGAAGAAACAATTGAGACTCTGATATCTAGCGGAGAAAGCGAAAATTTTCTGCAGAAAGCGATTCAAGAACAGGGTAGAGGCCAAATAATGGACACAATATCAGAAATACAAGAGAGGCACGATGCAGTGAAGGAGATAGAGAAGAACCTGATTGAGCTGCACCAGATATTTCTGGACATGGCTGCGCTTGTGGAGGCGCAGGGGCATCAGCTTAACGACATAGAGAGTCACGTTGCACATGCTAATTCGTTTGTCCGGCGAGGCACTCAGCAACTGCAGGAGGCCAAAGAACAGCAGAAAAGCTCGAGGAAATGGACGTGCATTGCTGTAATTCTCGGCGCCGTTCTCGTTGCCGTTCTGCTCTTCCCGCTTTTGACGTCGATTTTGCCCCACTTGATGTAG 912 46.6 MNDLFSNSFKKYADLKQQAYEDGMEAGNETVDLDKFFEDVENVKEDMKQVEKLYKRLQEANEESKVVHNAKTMKELRARMDQDVSQVLRRVKVIKGKLEALDRSNASHRSLPGCGPGSSADRTRTSVVSGLGKKLKDTMDDFQSLRARMNAEYKETVERRYFTITGEKANEETIETLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTQQLQEAKEQQKSSRKWTCIAVILGAVLVAVLLFPLLTSILPHLM 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44512231 44513142 - Bda032344.1 Bda09g01276 13526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01276 303 CDD SNARE_syntaxin1-like 202 264 - -
Bda09g01276 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Bda09g01276 303 PANTHER T-SNARE-RELATED 10 295 - -
Bda09g01276 303 CDD SynN 33 190 IPR006011 GO:0016020
Bda09g01276 303 Pfam SNARE domain 240 291 IPR000727 -
Bda09g01276 303 Coils Coil 33 67 - -
Bda09g01276 303 Gene3D - 33 160 - -
Bda09g01276 303 MobiDBLite consensus disorder prediction 106 127 - -
Bda09g01276 303 PANTHER SYNTAXIN 10 295 IPR045242 -
Bda09g01276 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Bda09g01276 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bda09g01276 303 Gene3D - 192 295 - -
Bda09g01276 303 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Bda09g01276 303 SMART tSNARE_6 198 265 IPR000727 -
Bda09g01276 303 SMART SynN_4 28 154 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00422 Bda-Chr1:30755288 Bda09g01276 Bda-Chr9:44512231 7.28E-117 dispersed
Bda03g00658 Bda-Chr3:5593717 Bda09g01276 Bda-Chr9:44512231 1.38E-123 dispersed
Bda05g01127 Bda-Chr5:59493476 Bda09g01276 Bda-Chr9:44512231 7.02E-123 dispersed
Bda09g01276 Bda-Chr9:44512231 Bda11g01860 Bda-Chr11:53717274 1.17E-65 dispersed
Bda14g01003 Bda-Chr14:8450716 Bda09g01276 Bda-Chr9:44512231 8.26E-64 dispersed
Bda06g00358 Bda-Chr6:5725017 Bda09g01276 Bda-Chr9:44512231 1.61E-87 transposed
Bda02g00552 Bda-Chr2:46377171 Bda09g01276 Bda-Chr9:44512231 6.98E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01276 K08486 - csv:101217140 520.776