Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01286 ATGGCGATTCAGGTGCCGCATGACTTCAAGTGTCCGATTTCGCTGGAGACAATGACTGACCCGGTTATACTTTCATCGGGTCATACCTTTGATCGGGCCTCTATCCAACGGTGGCTCGACGATGGCCACCGGAATTGTCCTATCACTCTTCTTCCCCTCCCTCAATGTCCTACGCTCATCCCCAACCACGCTCTCAGAAGCTTAATTTCAAACTATACTACCCTTTCGCTTCCCAAACAGCCATCTCGTCCCGAGCCCCAATCCCTAATCTCCGCCCTAACTGCCCCGTCTTCTTCGGTGCAAGCCAAACTCGATTCGCTGAACCAACTAGCACGGTTGTCGAAGCGCGACTCTGTGTTTCGTAGAAAGTTGATGGAGTCGGGTGTCGTCTCGCCGGTTCTTAAATGTGCTGGCTCCTGCGATGTAGGTCTACAAGAGAAAGCGCTCGCGTTATTCCTGAATCTTAGTTTAGACGACGATAACAAAGTGGGTTTGGTTGCAGAAGGTGCAATTGGGTTTATCGTCGCTGCTCTACGCGGTGGCTCGTCGGATTGCCGAGCTGTAGCAGCGACGATTCTGACAAGCTTGGCAGTCGTGGAGGTCAATAAGGTCACAATTGGAGAATACCCACATGCAGTTCGAGCTTTGGTATCGCTTCTACGTGAAGGTAGAGGCCGGGAGAAGAAAGAAGCGGCGACGGCACTTTATGCCATCTGTTCATTCCCGGAGAATCGGCTGCGAGCGGTGGGATGTGGTGCTGTCCCGATTCTGATTCGAATTGCGGATTTTGGTCTTGAAAGGGCTATCGAAGTTTTGAGCCATTTAGCAAAATGCAAGGAAGGTCGAGAAGAGATGCAGAGATTGGAGGGATGCTTGAAAATCTTCGTGCGGGTGTTGAGAAATGGAAGTTCAAGAGGAGTTCAATATGCTCTTCTAACTTTAAGCTCTATCTGTTGTCATTGCGATGGAATGTGTTTAGAAGCTAGGAGAGAAGGAGCTTTGGATATGGCCATGGCTTTGGTTGACGATGACAACGACAAAATCAGGAGAAATGCTTCAAATTTAATCCGGGTTTTGCAAGAGAGCCATTTTACGAGGTAA 1101 49.41 MAIQVPHDFKCPISLETMTDPVILSSGHTFDRASIQRWLDDGHRNCPITLLPLPQCPTLIPNHALRSLISNYTTLSLPKQPSRPEPQSLISALTAPSSSVQAKLDSLNQLARLSKRDSVFRRKLMESGVVSPVLKCAGSCDVGLQEKALALFLNLSLDDDNKVGLVAEGAIGFIVAALRGGSSDCRAVAATILTSLAVVEVNKVTIGEYPHAVRALVSLLREGRGREKKEAATALYAICSFPENRLRAVGCGAVPILIRIADFGLERAIEVLSHLAKCKEGREEMQRLEGCLKIFVRVLRNGSSRGVQYALLTLSSICCHCDGMCLEARREGALDMAMALVDDDNDKIRRNASNLIRVLQESHFTR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44634210 44635310 + Bda032355.1 Bda09g01286 13536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01286 366 Gene3D - 86 264 IPR011989 -
Bda09g01286 366 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 360 - -
Bda09g01286 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bda09g01286 366 SUPERFAMILY ARM repeat 88 359 IPR016024 -
Bda09g01286 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Bda09g01286 366 Gene3D - 265 363 IPR011989 -
Bda09g01286 366 PANTHER U BOX DOMAIN-CONTAINING 1 360 - -
Bda09g01286 366 Pfam U-box domain 5 73 IPR003613 GO:0004842|GO:0016567
Bda09g01286 366 SUPERFAMILY RING/U-box 3 73 - -
Bda09g01286 366 CDD RING-Ubox_PUB 9 49 IPR045210 -
Bda09g01286 366 SMART arm_5 158 198 IPR000225 GO:0005515
Bda09g01286 366 SMART arm_5 278 319 IPR000225 GO:0005515
Bda09g01286 366 SMART arm_5 321 361 IPR000225 GO:0005515
Bda09g01286 366 SMART arm_5 117 157 IPR000225 GO:0005515
Bda09g01286 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01749 Bda-Chr1:53663078 Bda09g01286 Bda-Chr9:44634210 1.15E-174 dispersed
Bda09g01286 Bda-Chr9:44634210 Bda14g00363 Bda-Chr14:2631344 3.25E-55 dispersed
Bda09g01286 Bda-Chr9:44634210 Bda07g00590 Bda-Chr7:7230889 3.78E-55 transposed
Bda09g01286 Bda-Chr9:44634210 Bda02g00818 Bda-Chr2:48770320 1.76E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01286 - - zju:107421885 533.872