Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01316 ATGGCAGCTTCTCTCTCTTCTGTCGTGCTGGTCGTTGTACTAATGCATTTTCTAGCAACAACCCTCGTTTCATCTTCCCCAGTTCAAGACCCTGAATTAGTCGTGGATGAAGTTCTTACGAGCATCAACAACGCCTCCATTAGCAGAAGAAATCTAGCTTCGTGTAGTACAGGCAACCCCATTGACGACTGTTGGAGGTGCGACTCCAATTGGGAGACTAACCGGAAGCGTCTCGCTGATTGTGCCATCGGCTTCGGCAAGGGGGCGATCGGCGGGAGAGATGGAAAGATTTACGTCGTCACTGATCCAACCGACGAAGACCTCGTAAACCCTAAACCAGGCACTCTCCGTTACGCGGTCATACAAGACGAGCCCCTCTGGATCATCTTCAGTCGAGATATGGTCATCAAGCTAAAAGCGGAGCTCATCATGAACTCCTTCAAGACCATCGACGGCCGCGGAGCCAACGTCCACATCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACGAACATCATAATTCACGGAATCAGCATTCACGATTGCAAGGTCGGAGGGAACACCTACGTGAGAGACTCGCCGGATCATTACGGCTGGCGAACGTTGTCAGATGGAGATGGGATTTCGATCTTCGGAGGAAGCTATGTTTGGGTGGACCATTGCTCTCTGTCTAACTGCAACGACGGTCTGATAGACGCCATTCATGGATCGACCGCCATAACCATATCTAACAATTACATGACCCATCACAACAAAGTCATGCTCTTAGGCCACAGCGATTCCTACCAACAAGACAAGAACATGCAAGTCACCATAGCTTTCAACCATTTCGGAGAAGGATTAATCCAGAGAATGCCAAGATGCAGACTTGGGTATTTCCACGTCGTGAATAATGACTACACTCATTGGGTCATGTACGCCATTGGCGGTAGCGCAGCTCCGACGATCAACAGCCAAGGCAACAGATTTCTAGCCCCAGACGACGCTGCCCACAAAGAGGTAACGAAGCACGAGAACACAGCGGAGAGAGTATGGACAAACTGGAACTGGAGATCGCAGGGAGATTTGATGTTAAACGGTGCGTTTTTCACTAGATCTGGATCGGCAGGGTCCTCCAGCTACGCCAAGGCGTCGAGCGTGAGCGCAAGACCGGTGTCGCTAGTGAGCTCACTCACCGCCGGCGCCGGCGCTCTTAGATGCAAAAAGGGTTCTCTTTGCTGA 1224 51.31 MAASLSSVVLVVVLMHFLATTLVSSSPVQDPELVVDEVLTSINNASISRRNLASCSTGNPIDDCWRCDSNWETNRKRLADCAIGFGKGAIGGRDGKIYVVTDPTDEDLVNPKPGTLRYAVIQDEPLWIIFSRDMVIKLKAELIMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGISIHDCKVGGNTYVRDSPDHYGWRTLSDGDGISIFGGSYVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYQQDKNMQVTIAFNHFGEGLIQRMPRCRLGYFHVVNNDYTHWVMYAIGGSAAPTINSQGNRFLAPDDAAHKEVTKHENTAERVWTNWNWRSQGDLMLNGAFFTRSGSAGSSSYAKASSVSARPVSLVSSLTAGAGALRCKKGSLC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44937624 44939115 + Bda032387.1 Bda09g01316 13566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01316 407 Gene3D - 58 400 IPR012334 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Bda09g01316 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Bda09g01316 407 PANTHER PECTATE LYASE 18-RELATED 12 404 IPR045032 GO:0030570
Bda09g01316 407 SUPERFAMILY Pectin lyase-like 43 401 IPR011050 -
Bda09g01316 407 SMART amb_all 133 330 IPR002022 -
Bda09g01316 407 Pfam Pectate lyase 141 324 IPR002022 -
Bda09g01316 407 PANTHER PECTATE LYASE 12 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01316 Bda-Chr9:44937624 Bda14g00785 Bda-Chr14:6062290 0 dispersed
Bda13g01679 Bda-Chr13:40172820 Bda09g01316 Bda-Chr9:44937624 2.49E-165 dispersed
Bda14g00368 Bda-Chr14:2672466 Bda09g01316 Bda-Chr9:44937624 4.55E-137 dispersed
Bda02g00603 Bda-Chr2:46877864 Bda09g01316 Bda-Chr9:44937624 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01316 K01728 - zju:107428464 669.463