Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01383 ATGAAGTCACATGACAAAGGTAATGGTGATGCATCAAAGCCTGCAAAACCAGCGTCAGGCCCTTCAGAAAAACCTTCTTCAGCTAAGTTGCAGCCTGATAAATCAGTAGAGGAAACTCAAGGAAGTGCGAGCAGAAGGAAAACTAGCAAGTATTTTGCCGCAAAAAACCAAAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACCAAAAGAAAGACGCAAGAGGATAGTAAGAACCTAGAGAAAAGTAAACCGTCAAAAAAAATTCGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCACTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTCCTGATAAACCTATGAGTGTCGAAGAAAGCGATGAGGATGAAGATAAAAACACTGAATTACAAACAAAAAAATCTGGTGGAAGAGGACAGGGAGGCAGGGGTTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGACGTGGGGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGTAGGTGCTGCTGAATGTCTGGCTGGTTTAACATTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACGGGATCTGTTAGCAAGAAAACAAGTTATCTTCTATGTGATGAAGATATTGAAGGCAGGAAATCTTCTAAAGCTAAGGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAAGTTAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAGTGAGAAAACAGAAGTCAAGCAACTTCATGACTGGTTGGCACATTGGAAAGAGAACTTTCTTGATATTGGAAACAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTAAGTGGAACACCTGGCATTGGGAAAACTACATCGGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAGCAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCAGCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTGAAGAGTCTTGTCAATTACTGTTTGCTTCTCAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCTGGTTGCAAAAGCGGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCAATGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCAGTTACAACTCTAGCAAGTTGAAGATGGATGAACGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTTGTTCAGGAAAATTACCTTAACTATAGATCAAACTTAGTTGGCAAGGATGACAATGGGATAAAACGCATAGACTGTATTGCTCGTGCTGCTGAATCCATTGCAGATGGGGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCGTGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAACTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCACGTTCTGGCTTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCCAAATTTCGGGGACATCCAAATCCATTGGATGGCATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTAAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGAGGAGGTATTAGGTGATGGTGATAAACTGGAAGATAGTGAAGAAGAGAGATCTTCAGACACTGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGAACGAAAGTTCAGCTGGATTTGAAGGGCAAAGTAAATTCGAACTCCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCAGCCAAGAAAGGTGGGAGTGGGAGTGGGAGAGCCTCAGCACCCACTGCCAAAAGAAAGAGATGA 2718 41.98 MKSHDKGNGDASKPAKPASGPSEKPSSAKLQPDKSVEETQGSASRRKTSKYFAAKNQKGENEEQNEELLTKRKTQEDSKNLEKSKPSKKIRKVDVDDDDDLVFSTSRKDLVGTTPNKKLKSGSGKGIPDKPMSVEESDEDEDKNTELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPVGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTSYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQKLMDEDIKPLPRKSPQKVELKNKGFTKVTSPALGKSEKTEVKQLHDWLAHWKENFLDIGNKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQAIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVSMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMLVAKAEGLQVNEIALEELAERVNGDMRMAINQLQYMSLSLSVIKLFSYNSSKLKMDERIGLSMSDPDLVPLLVQENYLNYRSNLVGKDDNGIKRIDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLRGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSEEVLGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNSKKSAGRGKGGSEASSAKKGGSGSGRASAPTAKRKR 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45695693 45704075 - Bda032465.1 Bda09g01383 13633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01383 905 MobiDBLite consensus disorder prediction 1 195 - -
Bda09g01383 905 CDD BRCT_RFC1 199 277 - -
Bda09g01383 905 PIRSF RFC1 1 320 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bda09g01383 905 PIRSF RFC1 325 876 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bda09g01383 905 SUPERFAMILY post-AAA+ oligomerization domain-like 556 691 IPR008921 GO:0003677|GO:0006260
Bda09g01383 905 MobiDBLite consensus disorder prediction 24 38 - -
Bda09g01383 905 Pfam ATPase family associated with various cellular activities (AAA) 367 466 IPR003959 GO:0005524|GO:0016887
Bda09g01383 905 MobiDBLite consensus disorder prediction 814 844 - -
Bda09g01383 905 SUPERFAMILY BRCT domain 202 279 IPR036420 -
Bda09g01383 905 MobiDBLite consensus disorder prediction 845 875 - -
Bda09g01383 905 PANTHER REPLICATION FACTOR C SUBUNIT 1 12 873 - -
Bda09g01383 905 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 12 873 - -
Bda09g01383 905 CDD HLD_clamp_RFC 500 553 - -
Bda09g01383 905 Pfam Replication factor RFC1 C terminal domain 615 777 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Bda09g01383 905 CDD AAA 360 463 - -
Bda09g01383 905 Gene3D - 554 657 - -
Bda09g01383 905 SMART BRCT_7 201 279 IPR001357 -
Bda09g01383 905 Pfam BRCA1 C Terminus (BRCT) domain 203 276 IPR001357 -
Bda09g01383 905 SMART AAA_5 363 501 IPR003593 -
Bda09g01383 905 MobiDBLite consensus disorder prediction 814 905 - -
Bda09g01383 905 Gene3D - 502 553 - -
Bda09g01383 905 ProSiteProfiles BRCT domain profile. 199 277 IPR001357 -
Bda09g01383 905 Gene3D - 322 499 IPR027417 -
Bda09g01383 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 548 IPR027417 -
Bda09g01383 905 MobiDBLite consensus disorder prediction 56 105 - -
Bda09g01383 905 Gene3D BRCT domain 176 278 IPR036420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01191 Bda-Chr4:62546510 Bda09g01383 Bda-Chr9:45695693 2.84E-06 dispersed
Bda09g01383 Bda-Chr9:45695693 Bda13g00020 Bda-Chr13:368117 4.65E-17 dispersed
Bda09g01383 Bda-Chr9:45695693 Bda08g00530 Bda-Chr8:5300999 4.49E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01383 K10754 - jre:109014000 1138.25