Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01411 ATGGGTATAAGAAACCACCTGGACGAAGAAAACATTCTTTGTTTTCAGTCTCAGCCTTTCATCGAGTGGCTCAAACCACCCTCCTCTTCGTCCTCTTCGTCTTCTTCGTCTGCTCTTTTCGCTGCTCCCATGGCGGATTCCACCCAGTGTCTTCCTCTTCTGAGCAGGTTCTCGGAGCAAAAACAAGTGAAGAAGGAAGAAGATGACTATAAAGTCATGGTGACTTTGCATATAGGATTGCCCAGTAAAGATGATTCTGATCAAGATGAAGAAAATCATCAGAGTTTTACAGAAATATCCAGGAATCGCTCTAATGGCTGCCCTTTTAACTCAGAAAGCAGATTTTGGATTCCTACTCCTTCGCAGATTCTTGTGGGGCCGATGCAGTTTGCTTGCTCAATATGCAGCAAGACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGACATGGATCAGAATACAGAAAAGGGCCAGATTCACTGCGAGGAACACAGCCAGCAGCAATGCTAAGATTACCCTGCTATTGCTGTGCTCATGGCTGCAAGAACAACATAAACCATCCAAGAGCAAAGCCATTAAAGGACTTTAGAACTCTCCAAACCCACTACAAGAGGAAGCATGGATCCAAGCCATTTTCCTGCAGAAAGTGTGGGAAGCAATTTGCAGTGAAAGGAGATTGGAGAACCCACGAGAAAAATTGTGGGAAATTCTGGTATTGTTCTTGTGGGTCGGATTTTAAACACAAAAGATCACTCAAAGATCATATTAGGTCGTTTGGAAATGGCCACTCTCCAAACCCTCCTCTTGATGACAAGGAATTTTGCACGAATGTGTCTGAAGAAGATGAATTTACTGTCTTCTGA 870 43.68 MGIRNHLDEENILCFQSQPFIEWLKPPSSSSSSSSSSALFAAPMADSTQCLPLLSRFSEQKQVKKEEDDYKVMVTLHIGLPSKDDSDQDEENHQSFTEISRNRSNGCPFNSESRFWIPTPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFSCRKCGKQFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIRSFGNGHSPNPPLDDKEFCTNVSEEDEFTVF 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45986994 45988646 + Bda032498.1 Bda09g01411 13661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01411 289 MobiDBLite consensus disorder prediction 81 105 - -
Bda09g01411 289 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Bda09g01411 289 MobiDBLite consensus disorder prediction 82 97 - -
Bda09g01411 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Bda09g01411 289 Gene3D Classic Zinc Finger 210 269 - -
Bda09g01411 289 SUPERFAMILY beta-beta-alpha zinc fingers 200 234 IPR036236 -
Bda09g01411 289 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 38 - -
Bda09g01411 289 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 46 285 - -
Bda09g01411 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 270 IPR013087 -
Bda09g01411 289 SUPERFAMILY beta-beta-alpha zinc fingers 121 153 IPR036236 -
Bda09g01411 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 234 IPR013087 -
Bda09g01411 289 SMART c2h2final6 214 234 IPR013087 -
Bda09g01411 289 SMART c2h2final6 177 209 IPR013087 -
Bda09g01411 289 SMART c2h2final6 130 152 IPR013087 -
Bda09g01411 289 PANTHER ZINC FINGER PROTEIN WIP2 1 38 IPR043584 GO:0003700|GO:0010468
Bda09g01411 289 PANTHER ZINC FINGER PROTEIN WIP2 46 285 IPR043584 GO:0003700|GO:0010468
Bda09g01411 289 Gene3D Classic Zinc Finger 129 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01411 Bda-Chr9:45986994 Bda11g00677 Bda-Chr11:6795926 2.81E-103 dispersed
Bda09g01411 Bda-Chr9:45986994 Bda04g00737 Bda-Chr4:56575275 2.59E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16449 PF13912 zf-C2H2_6 0.00012 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01411 - - qsu:111992789 419.853