Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda09g01413 | ATGGCAGAAGAGCATCGATGCCAGGCCCCGAAGCTTTGTGTCAACAACTGCGGCTTCTTCGGGAGCCCGGCGACTCAAAATCTCTGCTCCAAATGTTACCGAGACCTTCAGCTCAAGGAACAACGATCCTCCTCCGCCGTGCTGGCCCTCAGCCAAACTCTAGCCTCCTCCGCCTCCTCTTCCTCCGCCGTCTCATCTCTCAGTGCTCCACCGGCAATCCCTCAGTCTACAACTTGCGAGCAGATTCAGCCATCTCCAGAGATCGGAATACGAGGAGAGACCGCGGCAGTTACGACTCCGGCGAACAAGTGCGGGAGATGCACGAGGCGCGTGGGACTAACGGGTTTCAAGTGCCGCTGTGGGACGACGTTCTGCGGTTCTCACCGGTACCCTGAGCAACACGGCTGCGAGTTTGACTTCAAGGGGATGGGGAGGGATCAGATCGCCAAGGCGAATCCAATAGTGAAGGGGGAGAAACTGCAGAAAATTTAA | 492 | 57.11 | MAEEHRCQAPKLCVNNCGFFGSPATQNLCSKCYRDLQLKEQRSSSAVLALSQTLASSASSSSAVSSLSAPPAIPQSTTCEQIQPSPEIGIRGETAAVTTPANKCGRCTRRVGLTGFKCRCGTTFCGSHRYPEQHGCEFDFKGMGRDQIAKANPIVKGEKLQKI | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 46001075 | 46001566 | - | Bda032500.1 | Bda09g01413 | 13663 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda09g01413 | 163 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 12 | 51 | - | - | |
| Bda09g01413 | 163 | Pfam | A20-like zinc finger | 12 | 34 | IPR002653 | GO:0003677|GO:0008270 | |
| Bda09g01413 | 163 | ProSiteProfiles | Zinc finger AN1-type profile. | 98 | 144 | IPR000058 | GO:0008270 | |
| Bda09g01413 | 163 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 1 | 163 | - | - | |
| Bda09g01413 | 163 | Gene3D | - | 1 | 70 | - | - | |
| Bda09g01413 | 163 | ProSiteProfiles | Zinc finger A20-type profile. | 7 | 41 | IPR002653 | GO:0003677|GO:0008270 | |
| Bda09g01413 | 163 | PANTHER | ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 | 1 | 163 | - | - | |
| Bda09g01413 | 163 | SMART | AN1_Zf_4 | 104 | 141 | IPR000058 | GO:0008270 | |
| Bda09g01413 | 163 | Pfam | AN1-like Zinc finger | 104 | 140 | IPR000058 | GO:0008270 | |
| Bda09g01413 | 163 | Gene3D | - | 92 | 149 | IPR035896 | - | |
| Bda09g01413 | 163 | SUPERFAMILY | AN1-like Zinc finger | 95 | 158 | IPR035896 | - | |
| Bda09g01413 | 163 | SMART | A20_3 | 10 | 34 | IPR002653 | GO:0003677|GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda02g00955 | Bda-Chr2:49699368 | Bda09g01413 | Bda-Chr9:46001075 | 6.98E-87 | dispersed | |
| Bda07g00738 | Bda-Chr7:8711201 | Bda09g01413 | Bda-Chr9:46001075 | 1.80E-40 | dispersed | |
| Bda09g00307 | Bda-Chr9:3843849 | Bda09g01413 | Bda-Chr9:46001075 | 2.00E-37 | dispersed | |
| Bda09g01413 | Bda-Chr9:46001075 | Bda10g00731 | Bda-Chr10:41725265 | 4.01E-31 | dispersed | |
| Bda06g00058 | Bda-Chr6:609793 | Bda09g01413 | Bda-Chr9:46001075 | 2.37E-32 | transposed | |
| Bda02g00709 | Bda-Chr2:47932049 | Bda09g01413 | Bda-Chr9:46001075 | 2.83E-87 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda09g01413 | - | - | qsu:111994597 | 205.682 |