Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01436 ATGCTCTCACTGTGTCAATGCCATTGTCTAGGCCACGTCTCTCTCTTTCGCCATCCCTCCCACTTCAGGAAAGCTATCTCTCTGTCTCTTATCCAAACCAGCTCCGTCTCTCTTAAGCCTTTCTTCTCTTTACGCTGTAAAAACGCCATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCTGCAGCCAAGAAAAAACCCCAACCTTCTTCTCCTAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTCCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGACAGTCGAGTTCTCGTCAGTTGTAATGGTCCTAGTTCAGGGGTTTCCGCAGATACCCGTAGTTCGTTAGATGTTGACCAAGTTGTGGAAAATGATAGCGATTTCGGAACCAAGAATGCACCGGTTGCGAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATTGGTAAATTGAAGAGTAGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCTGAAATCGGTAGCTTGTTGGAAAAATGGAGAACGCGTGCCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACAGATATAGTGTGCAATGACTTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCAATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAGTGTTTAGGCTGATTGCCAAGGCATGTTCTATTTTGTTCAGAAATTACTTAACACATATTTATACATTTGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTTGTAGCTGCCACTGACTGTGAACCTCTATACTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGGCAAGCTGCCGTATATGCTGAAAAACATTCTAAACCACCATCGCACATCCAATCTCCTTTAGAAGAGGCTACCAAGATTGTCAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCTGCGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAAACGTGTAGCTTTACACCAGGTGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAGGGTGTATCTGAGATCACAAATAAATTCCAGGATATGGAATTTACCTGTGAGTACAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATACAGCAGAAATGCCGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAATCATCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAGAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAACGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGTAGAGAGCACCTTTATAATTCGTTTTGGGAAGAAACTGGATACTTTCAGTTTGCCACAGCAATAACAACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACGCTGCTGTTGATGAAAGTTGTGAGGGGTTAATTATCAAAACGTTAGATAGAGATGCGACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTACATAGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGAAAGCGAACAGGGGTTTATGGCGCATTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTTGATGAACGTTCAGCTAGTCTACGTAATAGAGTGATTACTGAACCGAAGTCTTACTATCGGTATGGGGACTCAATCAATCCTGATGTGTGGTTTGAACCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATCGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGCAAGACAAGAATCCAGAACAAGCCTCGTCATCTGAGCAAGTGGCTGAGATGTATAATGCTCAAAAACACAATCAACATAACAACCAAGAAGACAATGAAGATGATTGA 2298 42.08 MLSLCQCHCLGHVSLFRHPSHFRKAISLSLIQTSSVSLKPFFSLRCKNAMSSRPSAFDALMSGARAAAKKKPQPSSPKKRKTLDSSIPPLKPSPTKALDLPPAIEQQSDSRVLVSCNGPSSGVSADTRSSLDVDQVVENDSDFGTKNAPVAKKMCASSIEERIGKLKSSISELKKKAKDFDLKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNDLGDLGLVAKASRSSQSMMRKPDALNVVKVFEVFRLIAKACSILFRNYLTHIYTFESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPSHIQSPLEEATKIVKQVYSVLPVYDKIIPALLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEITNKFQDMEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKSSVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFWEETGYFQFATAITTNDLEEIQKFLDAAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRNRVITEPKSYYRYGDSINPDVWFEPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVRQDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46187919 46193877 + Bda032523.1 Bda09g01436 13686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01436 765 Gene3D - 403 601 - -
Bda09g01436 765 SUPERFAMILY Nucleic acid-binding proteins 605 751 IPR012340 -
Bda09g01436 765 MobiDBLite consensus disorder prediction 730 765 - -
Bda09g01436 765 PANTHER DNA LIGASE 1 97 221 - -
Bda09g01436 765 ProSiteProfiles ATP-dependent DNA ligase family profile. 499 635 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bda09g01436 765 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 277 748 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bda09g01436 765 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 417 425 IPR016059 GO:0003909
Bda09g01436 765 Pfam DNA ligase N terminus 222 326 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 Pfam ATP dependent DNA ligase C terminal region 622 733 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 MobiDBLite consensus disorder prediction 733 755 - -
Bda09g01436 765 MobiDBLite consensus disorder prediction 63 101 - -
Bda09g01436 765 Gene3D DNA ligase/mRNA capping enzyme 422 547 - -
Bda09g01436 765 Gene3D - 222 395 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 Gene3D - 170 221 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 PANTHER DNA LIGASE 1 221 765 - -
Bda09g01436 765 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 221 765 - -
Bda09g01436 765 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 178 383 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 Gene3D - 602 764 IPR012340 -
Bda09g01436 765 CDD OBF_DNA_ligase_I 605 750 - -
Bda09g01436 765 Coils Coil 156 176 - -
Bda09g01436 765 CDD Adenylation_DNA_ligase_I_Euk 382 600 - -
Bda09g01436 765 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 97 221 - -
Bda09g01436 765 Pfam ATP dependent DNA ligase domain 393 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bda09g01436 765 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 385 603 - -
Bda09g01436 765 ProSitePatterns ATP-dependent DNA ligase signature 2. 571 597 IPR016059 GO:0003909
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01436 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] - zju:107411427 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00975 Bda-Chr9:39049648 Bda09g01436 Bda-Chr9:46187919 3.31E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g01342 . 7 358 Core DNA Replication Machinery Family AT2G37560 67.6 8.8e-140 493.4
Bda04g00178 . 7 278 Core DNA Replication Machinery Family AT2G37560 54.2 8.3e-98 354.0
Bda01g01840 . 1 402 Core DNA Replication Machinery Family AT2G01120 61.3 6.6e-137 484.2
Bda08g00143 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.7 5.8e-181 630.9
Bda01g02162 . 1 264 Core DNA Replication Machinery Family AT1G26840 68.9 7.9e-94 340.5
Bda06g00243 . 1 795 Core DNA Replication Machinery Family AT1G79150 55.0 1.4e-223 773.1
Bda09g00338 . 1 955 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1360.1
Bda02g00085 . 1 500 Core DNA Replication Machinery Family AT5G46280 69.1 8.6e-217 750.0
Bda14g00572 BCT 6 734 Core DNA Replication Machinery Family AT2G16440 73.2 3.3e-313 1070.8
Bda09g00764 . 1 873 Core DNA Replication Machinery Family AT5G44635 68.5 0.0e+00 1135.2
Bda10g00656 . 1 585 Core DNA Replication Machinery Family AT4G02060 82.6 3.9e-283 970.7
Bda02g00849 . 1 399 Core DNA Replication Machinery Family AT2G29680 63.4 3.6e-142 501.9
Bda02g00849 . 1 369 Core DNA Replication Machinery Family AT1G07270 63.4 6.6e-130 461.1
Bda10g00488 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 8.9e-257 882.9
Bda10g00495 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.9 9.9e-256 879.4
Bda04g00428 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 8.6e-252 866.3
Bda05g01111 . 1 469 Core DNA Replication Machinery Family AT3G25100 77.6 1.8e-193 672.5
Bda03g01734 . 7 215 Core DNA Replication Machinery Family AT3G09660 79.4 8.7e-90 328.6
Bda05g00009 . 7 632 Core DNA Replication Machinery Family AT2G14050 76.7 3.3e-281 964.1
Bda08g00993 . 6 395 Core DNA Replication Machinery Family AT2G20980 54.0 8.9e-112 400.6
Bda10g00977 . 1 955 Core DNA Replication Machinery Family AT1G77320 50.5 3.9e-257 884.8
Bda04g00667 . 529 624 Core DNA Replication Machinery Family AT4G02110 74.0 1.0e-41 169.5
Bda12g00659 . 1 191 Core DNA Replication Machinery Family AT1G80190 68.6 9.9e-75 276.6
Bda06g00222 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bda09g00567 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda09g00575 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 1.3e-58 222.6
Bda08g00710 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 2.1e-58 221.9
Bda11g01457 . 1 145 Core DNA Replication Machinery Family AT3G12530 68.3 2.6e-56 214.9
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT1G19080 67.6 6.8e-70 260.4
Bda15g00318 . 1 182 Core DNA Replication Machinery Family AT3G55490 67.6 6.8e-70 260.4
Bda13g00221 . 15 164 Core DNA Replication Machinery Family AT5G49010 68.0 3.5e-53 204.9
Bda14g01239 . 1 1546 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1732.2
Bda14g01247 . 1 597 Core DNA Replication Machinery Family AT5G67100 66.3 3.1e-237 819.3
Bda10g00962 . 2 664 Core DNA Replication Machinery Family AT1G67630 53.0 2.0e-198 689.1
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda08g00470 . 1 418 Core DNA Replication Machinery Family AT5G41880 61.1 2.5e-163 572.0
Bda04g00382 . 27 1166 Core DNA Replication Machinery Family AT5G63960 77.1 0.0e+00 1753.4
Bda05g01086 . 4 440 Core DNA Replication Machinery Family AT2G42120 75.6 1.6e-199 692.2
Bda08g00182 . 1 448 Core DNA Replication Machinery Family AT1G67320 65.6 6.1e-187 650.6
Bda02g00714 . 2 2110 Core DNA Replication Machinery Family AT1G08260 68.8 0.0e+00 2882.4
Bda02g00714 . 9 2217 Core DNA Replication Machinery Family AT2G27120 65.9 0.0e+00 2858.2
Bda06g00861 . 2 202 Core DNA Replication Machinery Family AT5G22110 77.6 1.5e-92 337.0
Bda09g01383 . 1 826 Core DNA Replication Machinery Family AT5G22010 62.4 8.5e-267 916.8
Bda08g00530 . 3 331 Core DNA Replication Machinery Family AT1G63160 89.7 1.2e-170 595.9
Bda11g00726 BCT 1 355 Core DNA Replication Machinery Family AT5G27740 85.1 7.1e-177 616.7
Bda03g00016 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 1.9e-152 535.4
Bda13g01478 BCT 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 3.1e-159 558.1
Bda01g01451 . 14 187 Core DNA Replication Machinery Family AT1G77470 51.6 5.5e-39 158.7
Bda11g01026 . 26 612 Core DNA Replication Machinery Family AT2G06510 68.8 2.2e-250 861.7
Bda06g00521 . 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.6e-243 838.2
Bda15g00624 . 1 626 Core DNA Replication Machinery Family AT5G08020 67.0 4.8e-242 833.9
Bda06g00521 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.5 8.5e-242 833.2
Bda15g00624 . 1 620 Core DNA Replication Machinery Family AT5G61000 66.2 1.6e-240 828.9
Bda01g01616 . 1 361 Core DNA Replication Machinery Family AT5G26680 85.0 4.0e-179 624.4
Bda13g00449 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 1.6e-43 175.3
Bda13g00451 . 17 133 Core DNA Replication Machinery Family AT1G08840 70.1 2.1e-43 174.9
Bda15g00131 . 1 299 Core DNA Replication Machinery Family AT2G25100 68.2 5.5e-116 414.1
Bda09g01436 . 46 765 Core DNA Replication Machinery Family AT1G08130 61.9 8.2e-258 886.7
Bda09g01436 . 223 765 Core DNA Replication Machinery Family AT1G49250 66.3 3.9e-205 711.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32