Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01436 ATGCTCTCACTGTGTCAATGCCATTGTCTAGGCCACGTCTCTCTCTTTCGCCATCCCTCCCACTTCAGGAAAGCTATCTCTCTGTCTCTTATCCAAACCAGCTCCGTCTCTCTTAAGCCTTTCTTCTCTTTACGCTGTAAAAACGCCATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCTGCAGCCAAGAAAAAACCCCAACCTTCTTCTCCTAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTCCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGACAGTCGAGTTCTCGTCAGTTGTAATGGTCCTAGTTCAGGGGTTTCCGCAGATACCCGTAGTTCGTTAGATGTTGACCAAGTTGTGGAAAATGATAGCGATTTCGGAACCAAGAATGCACCGGTTGCGAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATTGGTAAATTGAAGAGTAGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCTGAAATCGGTAGCTTGTTGGAAAAATGGAGAACGCGTGCCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACAGATATAGTGTGCAATGACTTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCAATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAGTGTTTAGGCTGATTGCCAAGGCATGTTCTATTTTGTTCAGAAATTACTTAACACATATTTATACATTTGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTTGTAGCTGCCACTGACTGTGAACCTCTATACTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGGCAAGCTGCCGTATATGCTGAAAAACATTCTAAACCACCATCGCACATCCAATCTCCTTTAGAAGAGGCTACCAAGATTGTCAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCTGCGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAAACGTGTAGCTTTACACCAGGTGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAGGGTGTATCTGAGATCACAAATAAATTCCAGGATATGGAATTTACCTGTGAGTACAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATACAGCAGAAATGCCGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAATCATCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAGAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAACGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGTAGAGAGCACCTTTATAATTCGTTTTGGGAAGAAACTGGATACTTTCAGTTTGCCACAGCAATAACAACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACGCTGCTGTTGATGAAAGTTGTGAGGGGTTAATTATCAAAACGTTAGATAGAGATGCGACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTACATAGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGAAAGCGAACAGGGGTTTATGGCGCATTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTTGATGAACGTTCAGCTAGTCTACGTAATAGAGTGATTACTGAACCGAAGTCTTACTATCGGTATGGGGACTCAATCAATCCTGATGTGTGGTTTGAACCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATCGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGCAAGACAAGAATCCAGAACAAGCCTCGTCATCTGAGCAAGTGGCTGAGATGTATAATGCTCAAAAACACAATCAACATAACAACCAAGAAGACAATGAAGATGATTGA 2298 42.08 MLSLCQCHCLGHVSLFRHPSHFRKAISLSLIQTSSVSLKPFFSLRCKNAMSSRPSAFDALMSGARAAAKKKPQPSSPKKRKTLDSSIPPLKPSPTKALDLPPAIEQQSDSRVLVSCNGPSSGVSADTRSSLDVDQVVENDSDFGTKNAPVAKKMCASSIEERIGKLKSSISELKKKAKDFDLKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNDLGDLGLVAKASRSSQSMMRKPDALNVVKVFEVFRLIAKACSILFRNYLTHIYTFESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPSHIQSPLEEATKIVKQVYSVLPVYDKIIPALLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEITNKFQDMEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKSSVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFWEETGYFQFATAITTNDLEEIQKFLDAAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRNRVITEPKSYYRYGDSINPDVWFEPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVRQDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46187919 46193877 + Bda032523.1 Bda09g01436 13686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01436 765 Gene3D - 403 601 - -
Bda09g01436 765 SUPERFAMILY Nucleic acid-binding proteins 605 751 IPR012340 -
Bda09g01436 765 MobiDBLite consensus disorder prediction 730 765 - -
Bda09g01436 765 PANTHER DNA LIGASE 1 97 221 - -
Bda09g01436 765 ProSiteProfiles ATP-dependent DNA ligase family profile. 499 635 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bda09g01436 765 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 277 748 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bda09g01436 765 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 417 425 IPR016059 GO:0003909
Bda09g01436 765 Pfam DNA ligase N terminus 222 326 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 Pfam ATP dependent DNA ligase C terminal region 622 733 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 MobiDBLite consensus disorder prediction 733 755 - -
Bda09g01436 765 MobiDBLite consensus disorder prediction 63 101 - -
Bda09g01436 765 Gene3D DNA ligase/mRNA capping enzyme 422 547 - -
Bda09g01436 765 Gene3D - 222 395 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 Gene3D - 170 221 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 PANTHER DNA LIGASE 1 221 765 - -
Bda09g01436 765 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 221 765 - -
Bda09g01436 765 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 178 383 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bda09g01436 765 Gene3D - 602 764 IPR012340 -
Bda09g01436 765 CDD OBF_DNA_ligase_I 605 750 - -
Bda09g01436 765 Coils Coil 156 176 - -
Bda09g01436 765 CDD Adenylation_DNA_ligase_I_Euk 382 600 - -
Bda09g01436 765 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 97 221 - -
Bda09g01436 765 Pfam ATP dependent DNA ligase domain 393 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bda09g01436 765 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 385 603 - -
Bda09g01436 765 ProSitePatterns ATP-dependent DNA ligase signature 2. 571 597 IPR016059 GO:0003909
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00975 Bda-Chr9:39049648 Bda09g01436 Bda-Chr9:46187919 3.31E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01436 K10747 - zju:107411427 940.258