Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01471 ATGGGAAAAGAGAAGGTTCACATTAACATCGTGGTTATTGGCCATGTCGACTCTGGTAAGTCGACCACCACTGGTCACTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCATTCAAATATGCCTGGGTATTGGACAAACTCAAGGCTGAGCGTGAGCGTGGTATTACCATTGATATTGCCTTGTGGAAGTTTGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCAGGACATCGTGACTTTATCAAGAATATGATTACTGGTACCTCCCAGGCCGACTGTGCTGTGCTGATCATCGATTCCACCACCGGTGGGTTTGAAGCTGGTATTTCTAAGGATGGCCAGACCCGTGAGCATGCCTTGCTTGCTTTTACTCTTGGTGTGAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACTACTCCTAAGTACTCCAAGGCAAGGTATGATGAAATAGTGAAGGAAGTCTCGTCTTATCTCAAAAAGGTTGGTTACAACCCAGAAAAGATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCGGCCAACCTCGACTGGTACAAGGGTCCTACCCTCCTTGATGCCCTTGACTTGATCCAGGAGCCTAAGAGGCCTTCAGACAAGCCTCTGCGTCTCCCTCTTCAGGACGTCTACAAGATTGGTGGTATTGGAACTGTGCCTGTTGGACGTGTTGAGACTGGTGTTGTCAAGCCTGGAATGGTTGTTACTTTTGGCCCTACTGGACTCACAACTGAAGTTAAGTCTGTGGAGATGCATCATGAGGCTCTCCTGGAGGCTCTTCCTGGTGACAATGTGGGGTTCAATGTGAAAAATGTTGCCGTTAAGGATCTTAAGCGTGGTTTTGTCGCTTCTAACTCAAAGGATGATCCTGCGAGGGAAGCTGCCAACTTCACCTCACAGGTTATCATCATGAATCATCCAGGCCAGATTGGCAACGGCTATGCACCAGTTCTTGATTGCCACACCTCTCACATTGCAGTGAAGTTTGCAGAGATCTTGACCAAGATTGATAGACGATCTGGGAAGGAGCTCGAGAAGGAACCCAAGTTCTTGAAGAATGGTGATGCAGGAATGGTGAAGATGGTTCCAACCAAACCCATGGTGGTGGAGACGTTCTCTGAGTATCCCCCTCTTGGTCGTTTTGCCGTGAGAGACATGCGCCAAACTGTAGCTGTTGGTGTCATTAAGAGCGTTGAGAAGAAGGATCCATCCGGGGCGAAGGTCACCAAGTCGGCGGCCAAGAAGGGTGGAAAA 1347 48.55 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSANLDWYKGPTLLDALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKGGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46517877 46519336 - Bda034158 Bda09g01471 13721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01471 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bda09g01471 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bda09g01471 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bda09g01471 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 Gene3D Translation factors 323 430 - -
Bda09g01471 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bda09g01471 449 CDD EF1_alpha_II 230 320 - -
Bda09g01471 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Bda09g01471 449 Coils Coil 449 449 - -
Bda09g01471 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Bda09g01471 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Bda09g01471 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Bda09g01471 449 Gene3D - 1 226 IPR027417 -
Bda09g01471 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 CDD EF1_alpha_III 323 426 - -
Bda09g01471 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Bda09g01471 449 CDD EF1_alpha 9 227 - -
Bda09g01471 449 Gene3D Translation factors 229 316 - -
Bda09g01471 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bda09g01471 449 PANTHER TRANSLATION FACTOR 1 447 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00774 Bda09g01471 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00037 Bda-Chr8:299944 Bda09g01471 Bda-Chr9:46517877 0 dispersed
Bda09g01471 Bda-Chr9:46517877 Bda11g00347 Bda-Chr11:3873899 0 dispersed
Bda11g01644 Bda-Chr11:50442640 Bda09g01471 Bda-Chr9:46517877 2.30E-45 dispersed
Bda14g00918 Bda-Chr14:7188036 Bda09g01471 Bda-Chr9:46517877 3.49E-83 dispersed
Bda01g00704 Bda-Chr1:34325974 Bda09g01471 Bda-Chr9:46517877 3.57E-86 transposed
Bda04g00572 Bda-Chr4:54407733 Bda09g01471 Bda-Chr9:46517877 1.58E-45 transposed
Bda10g00599 Bda-Chr10:39988665 Bda09g01471 Bda-Chr9:46517877 1.67E-44 transposed
Bda14g00079 Bda-Chr14:613788 Bda09g01471 Bda-Chr9:46517877 6.44E-56 wgd
Bda15g00380 Bda-Chr15:6732927 Bda09g01471 Bda-Chr9:46517877 0 wgd
Bda02g00774 Bda-Chr2:48458204 Bda09g01471 Bda-Chr9:46517877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01471 K03231 - dct:110098189 882.093