Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01480 ATGTTGGATCTTAATCTCAATGTCATCTCGAACGATCCGAATCAGAACGATGAATCTATTTTGTTGATCGAGAAGCTTCCTCAGGGTTCGGTGAACCAAATGGACGAATCGGAGACATCAAATTCGTCGATTGTCAATGCGGATGTCTCGAGCAATGGATGTGACGAAGACTCGTGCTCTACACGCGCCGATGATGTGGTGGTGACATTGAACTTCGACATTTTGAAGGCTGGGAGGGGGAACGATGTCGTCACGAAGGAGTTCTTTCCTATAACTGGAGCTGCTACTGGAGTCAAAGGGGATTTTGGGAATTGGCAGGGGCAGAACTCGGCTTCTCCTTCCTCGTCTTCCAGGAAGAACTGGATCGACTTAGCGTTTGATCAGGGAGGCTCAGGAACTGACTTGAGAGTGGTTCAGCCACAACTACAACAACCGGTGAAAAAGAGCAGGAGGGGACCGAGGTCTCGAAGCTCGCAGTACAGAGGTGTAACGTTCTACCGGAGGACTGGACGATGGGAATCCCATATTTGGTATGTCAACTTGATTAAATTTTCGATTTCACTAATTTCTATAGCTTATGATCGAGCTGCAATAAAGTTCAGAGGAGTTGATGCAGACATCAATTTTAATCTCAGTGATTATGATGAAGAATTAAAACAGATGAAGAATCTTACCAAGGAAGAATTTGTTCACATACTCCGACGCCAGAGCACAGGCTTTTCAAGGGGGAGCTCGAAATATCGAGGTGTAACACTGCACAAATGTGGTCGATGGGAAGCTAGAATGGGACAGTTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCCTATGACAAGGCGGCTATCAAATATAATGGAAGGGAGGCTGTCACGAATTTTGAGCCTAGCACATATGAGGGGGAGATGATGTCAGAGGGTAGTAACGAAGGCTGCGAAAAATTTCTTGATCTAAACTTGGGAATTTCACCTCCTTCTGTCGATAATGGTCCCAAGGAAAATGAAGGCCTTCAGTTCAACACTCTTCCCTTTTATGTACGCAATGGAAGGTCTTCAAAGCAGATGGAAAGTCATGCTAATGGAAGGGTTGGTGATCCACCTATGGCCATGAAAGGGCTAGTATTGACACCGGAAAACCTGCCCTTTTGGAACAGTGTGCATCCGACTTACTTTCCCAATGAGGAAAGATTGTCAGAGAGGAGACTTGCATTAGGTTCTTCGCGAGGACTTCCCAATTGTACATGGCAAATTCATGGTCCAGTCGGTGCTACCCAAATGTCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCGTCTACCCCTTCCCCTGCTGCCATACCTCAATCAAATCCACCCACCTCCGCTCCACACAATCTCTGTTTTGCTTCGTCCTCATCTGCCTTCAACTCCTCGCCGTTTCATTTTCAAGTGAAGCCCCCACAAGCACCGCCGTAA 1485 46.33 MLDLNLNVISNDPNQNDESILLIEKLPQGSVNQMDESETSNSSIVNADVSSNGCDEDSCSTRADDVVVTLNFDILKAGRGNDVVTKEFFPITGAATGVKGDFGNWQGQNSASPSSSSRKNWIDLAFDQGGSGTDLRVVQPQLQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWYVNLIKFSISLISIAYDRAAIKFRGVDADINFNLSDYDEELKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKYNGREAVTNFEPSTYEGEMMSEGSNEGCEKFLDLNLGISPPSVDNGPKENEGLQFNTLPFYVRNGRSSKQMESHANGRVGDPPMAMKGLVLTPENLPFWNSVHPTYFPNEERLSERRLALGSSRGLPNCTWQIHGPVGATQMSLFSTAASSGFSFSSTPSPAAIPQSNPPTSAPHNLCFASSSSAFNSSPFHFQVKPPQAPP 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46582710 46585917 + Bda032571.1 Bda09g01480 13730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01480 494 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Bda09g01480 494 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Bda09g01480 494 SUPERFAMILY DNA-binding domain 158 211 IPR016177 GO:0003677
Bda09g01480 494 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Bda09g01480 494 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 464 - -
Bda09g01480 494 MobiDBLite consensus disorder prediction 31 57 - -
Bda09g01480 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 464 - -
Bda09g01480 494 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
Bda09g01480 494 SUPERFAMILY DNA-binding domain 245 304 IPR016177 GO:0003677
Bda09g01480 494 MobiDBLite consensus disorder prediction 31 58 - -
Bda09g01480 494 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Bda09g01480 494 Pfam AP2 domain 245 295 IPR001471 GO:0003700|GO:0006355
Bda09g01480 494 MobiDBLite consensus disorder prediction 448 467 - -
Bda09g01480 494 SMART rav1_2 159 216 IPR001471 GO:0003700|GO:0006355
Bda09g01480 494 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01480 Bda-Chr9:46582710 Bda14g01250 Bda-Chr14:13001301 6.55E-85 dispersed
Bda04g00251 Bda-Chr4:19847284 Bda09g01480 Bda-Chr9:46582710 2.26E-93 transposed
Bda14g00335 Bda-Chr14:2389991 Bda09g01480 Bda-Chr9:46582710 7.76E-13 wgd
Bda15g00186 Bda-Chr15:4427851 Bda09g01480 Bda-Chr9:46582710 6.20E-12 wgd
Bda02g00787 Bda-Chr2:48582555 Bda09g01480 Bda-Chr9:46582710 0 wgd
Bda03g00754 Bda-Chr3:6358952 Bda09g01480 Bda-Chr9:46582710 1.33E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16456 PF00847 AP2 7.00E-10 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01480 K09284 - csv:101222024 577.785