Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g01480 | ATGTTGGATCTTAATCTCAATGTCATCTCGAACGATCCGAATCAGAACGATGAATCTATTTTGTTGATCGAGAAGCTTCCTCAGGGTTCGGTGAACCAAATGGACGAATCGGAGACATCAAATTCGTCGATTGTCAATGCGGATGTCTCGAGCAATGGATGTGACGAAGACTCGTGCTCTACACGCGCCGATGATGTGGTGGTGACATTGAACTTCGACATTTTGAAGGCTGGGAGGGGGAACGATGTCGTCACGAAGGAGTTCTTTCCTATAACTGGAGCTGCTACTGGAGTCAAAGGGGATTTTGGGAATTGGCAGGGGCAGAACTCGGCTTCTCCTTCCTCGTCTTCCAGGAAGAACTGGATCGACTTAGCGTTTGATCAGGGAGGCTCAGGAACTGACTTGAGAGTGGTTCAGCCACAACTACAACAACCGGTGAAAAAGAGCAGGAGGGGACCGAGGTCTCGAAGCTCGCAGTACAGAGGTGTAACGTTCTACCGGAGGACTGGACGATGGGAATCCCATATTTGGTATGTCAACTTGATTAAATTTTCGATTTCACTAATTTCTATAGCTTATGATCGAGCTGCAATAAAGTTCAGAGGAGTTGATGCAGACATCAATTTTAATCTCAGTGATTATGATGAAGAATTAAAACAGATGAAGAATCTTACCAAGGAAGAATTTGTTCACATACTCCGACGCCAGAGCACAGGCTTTTCAAGGGGGAGCTCGAAATATCGAGGTGTAACACTGCACAAATGTGGTCGATGGGAAGCTAGAATGGGACAGTTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCCTATGACAAGGCGGCTATCAAATATAATGGAAGGGAGGCTGTCACGAATTTTGAGCCTAGCACATATGAGGGGGAGATGATGTCAGAGGGTAGTAACGAAGGCTGCGAAAAATTTCTTGATCTAAACTTGGGAATTTCACCTCCTTCTGTCGATAATGGTCCCAAGGAAAATGAAGGCCTTCAGTTCAACACTCTTCCCTTTTATGTACGCAATGGAAGGTCTTCAAAGCAGATGGAAAGTCATGCTAATGGAAGGGTTGGTGATCCACCTATGGCCATGAAAGGGCTAGTATTGACACCGGAAAACCTGCCCTTTTGGAACAGTGTGCATCCGACTTACTTTCCCAATGAGGAAAGATTGTCAGAGAGGAGACTTGCATTAGGTTCTTCGCGAGGACTTCCCAATTGTACATGGCAAATTCATGGTCCAGTCGGTGCTACCCAAATGTCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCGTCTACCCCTTCCCCTGCTGCCATACCTCAATCAAATCCACCCACCTCCGCTCCACACAATCTCTGTTTTGCTTCGTCCTCATCTGCCTTCAACTCCTCGCCGTTTCATTTTCAAGTGAAGCCCCCACAAGCACCGCCGTAA | 1485 | 46.33 | MLDLNLNVISNDPNQNDESILLIEKLPQGSVNQMDESETSNSSIVNADVSSNGCDEDSCSTRADDVVVTLNFDILKAGRGNDVVTKEFFPITGAATGVKGDFGNWQGQNSASPSSSSRKNWIDLAFDQGGSGTDLRVVQPQLQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWYVNLIKFSISLISIAYDRAAIKFRGVDADINFNLSDYDEELKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKYNGREAVTNFEPSTYEGEMMSEGSNEGCEKFLDLNLGISPPSVDNGPKENEGLQFNTLPFYVRNGRSSKQMESHANGRVGDPPMAMKGLVLTPENLPFWNSVHPTYFPNEERLSERRLALGSSRGLPNCTWQIHGPVGATQMSLFSTAASSGFSFSSTPSPAAIPQSNPPTSAPHNLCFASSSSAFNSSPFHFQVKPPQAPP | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46582710 | 46585917 | + | Bda032571.1 | Bda09g01480 | 13730 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g01480 | 494 | PRINTS | Ethylene responsive element binding protein signature | 285 | 305 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | PRINTS | Ethylene responsive element binding protein signature | 247 | 258 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | SUPERFAMILY | DNA-binding domain | 158 | 211 | IPR016177 | GO:0003677 | |
Bda09g01480 | 494 | ProSiteProfiles | AP2/ERF domain profile. | 246 | 303 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 464 | - | - | |
Bda09g01480 | 494 | MobiDBLite | consensus disorder prediction | 31 | 57 | - | - | |
Bda09g01480 | 494 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 464 | - | - | |
Bda09g01480 | 494 | CDD | AP2 | 245 | 305 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | SUPERFAMILY | DNA-binding domain | 245 | 304 | IPR016177 | GO:0003677 | |
Bda09g01480 | 494 | MobiDBLite | consensus disorder prediction | 31 | 58 | - | - | |
Bda09g01480 | 494 | Gene3D | AP2/ERF domain | 245 | 304 | IPR036955 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | Pfam | AP2 domain | 245 | 295 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | MobiDBLite | consensus disorder prediction | 448 | 467 | - | - | |
Bda09g01480 | 494 | SMART | rav1_2 | 159 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g01480 | 494 | SMART | rav1_2 | 246 | 309 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda09g01480 | Bda-Chr9:46582710 | Bda14g01250 | Bda-Chr14:13001301 | 6.55E-85 | dispersed | |
Bda04g00251 | Bda-Chr4:19847284 | Bda09g01480 | Bda-Chr9:46582710 | 2.26E-93 | transposed | |
Bda14g00335 | Bda-Chr14:2389991 | Bda09g01480 | Bda-Chr9:46582710 | 7.76E-13 | wgd | |
Bda15g00186 | Bda-Chr15:4427851 | Bda09g01480 | Bda-Chr9:46582710 | 6.20E-12 | wgd | |
Bda02g00787 | Bda-Chr2:48582555 | Bda09g01480 | Bda-Chr9:46582710 | 0 | wgd | |
Bda03g00754 | Bda-Chr3:6358952 | Bda09g01480 | Bda-Chr9:46582710 | 1.33E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16456 | PF00847 | AP2 | 7.00E-10 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g01480 | K09284 | - | csv:101222024 | 577.785 |