Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01572 ATGGATCCTATTAGTGGTAACAATAGCACGAGTCTCAGCAACAACTCCAACCTTGCTGCAAAGCAACGGCTGCGATGGACACATGAACTTCATGAACGATTTGTAGATTCCGTGGCTCAGCTTGGTGGGCCAGATCGTGCCACGCCCAAAGGTGTTCTTAGAGTGATGGGTGTGCAAGGTTTAACCATATACCACGTTAAAAGTCATTTACAGAAATATCGACTTGCAAAGTACCTTCCTGATTCATCATCAGATGGAAAAAATGCTGACAAGAAAGAATCTGGGGATTTGCTTTCTAATTTGGATGGATCATCGGGAATGCAAATTACTGAAGCACTAAAGCTACAAATGGAGGTTCAGAAACGACTTCATGAACAATTAGAGGTGCAGAGACAATTACAACTGCGAATCGAAGCACAAGGCAAGTACTTGAAAAAGATAATTGAAGAGCAACAAAGACTTACTGGGGTCCTTTCAGAAGTTCCAGCTTCTACCATGTCAGCCGCTATATCAGGTGACAAGAATGAGCCAGCAACACCAGGTGCAACCTCCGAATCTCCCCTCCAGGAAAAGGCTGCTAAGCAATGCGCTCTAGCCAAGAGCCTCTCTCTTGAGGATTCTCTCTCTTCTTCTCATGAGCCATTAACTCCAGATTCTTGCTGCCACGTCAGCCATCCAGATGACAGCCCCAAAGGTGAAAGGTCGACCAAGCAACAACATGCCATTACAGGTGGAGCCTATGGAAAACCCGAAATGGTGCTTACTCATCATATTCTTGAGTCGAGTAGAAGTGCTTCCTTCCAGCAACCCCATTCCACCTCAGGAATTGTAAACAATGAAGATTTAGTTAACGCTAATTCCTGCAACATCTAA 873 44.79 MDPISGNNSTSLSNNSNLAAKQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKNADKKESGDLLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLTGVLSEVPASTMSAAISGDKNEPATPGATSESPLQEKAAKQCALAKSLSLEDSLSSSHEPLTPDSCCHVSHPDDSPKGERSTKQQHAITGGAYGKPEMVLTHHILESSRSASFQQPHSTSGIVNNEDLVNANSCNI 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47239047 47241318 - Bda032676.1 Bda09g01572 13822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01572 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Bda09g01572 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 14 273 - -
Bda09g01572 290 Coils Coil 110 130 - -
Bda09g01572 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 78 IPR017930 -
Bda09g01572 290 MobiDBLite consensus disorder prediction 168 192 - -
Bda09g01572 290 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Bda09g01572 290 Pfam MYB-CC type transfactor, LHEQLE motif 107 153 IPR025756 -
Bda09g01572 290 MobiDBLite consensus disorder prediction 168 190 - -
Bda09g01572 290 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Bda09g01572 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 14 273 IPR044848 GO:0003700
Bda09g01572 290 MobiDBLite consensus disorder prediction 207 240 - -
Bda09g01572 290 MobiDBLite consensus disorder prediction 80 103 - -
Bda09g01572 290 Gene3D - 20 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01572 - - - vvi:100248144 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01487 Bda-Chr3:53135715 Bda09g01572 Bda-Chr9:47239047 2.04E-70 dispersed
Bda05g00988 Bda-Chr5:58314453 Bda09g01572 Bda-Chr9:47239047 2.57E-55 dispersed
Bda07g01170 Bda-Chr7:13944504 Bda09g01572 Bda-Chr9:47239047 8.94E-55 dispersed
Bda09g01572 Bda-Chr9:47239047 Bda13g00487 Bda-Chr13:5755722 1.62E-50 dispersed
Bda10g00450 Bda-Chr10:37341344 Bda09g01572 Bda-Chr9:47239047 4.99E-20 dispersed
Bda12g00346 Bda-Chr12:3983029 Bda09g01572 Bda-Chr9:47239047 2.22E-34 dispersed
Bda02g00896 Bda-Chr2:49319296 Bda09g01572 Bda-Chr9:47239047 2.24E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16463 PF00249 Myb_DNA-binding 4.50E-07 CL0123 Bda TF