Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01593 ATAGAGACAATGGAGGGTGGGGCTAATGGCGCCACTGGTCTGATGGCGTTTGGAGATAACAGTAACGGGCTGTGTTCAATGATGACGATGATGCATGGTATGAGCGCCCATCATCATCCTCATCTTAACTCAAACGCGGAGACCAACAGTCCATTTCTTCCGCTGCATTCTTCGACTACCAATAATCACGACCAAAATCGTAATAGTAGCAGCGGTTCTTCTTTCATGGTCGAGGACCGTCAAAACAACAGCTCTTGGTGTTATTTCATGGACACCCACAATAATGCTGAAAACAACTCGTCTTCTGATGTCAAGGCTAAGATTATGGCTCATCCTCACTATCATCGTCTGTTAGCTGCTTATCTTAATTGTCAAAAGGTAGGGGCTCCGCCGGAAGTGGTGGTTAAGCTAGAGGAAGCTTGTGCTTCAGTGGCGTCAATGGGCCACGCCGGTACAGGATGTCTCGGTGAAGATCCAGCGTTAGATCAATTCATGGAAGCCTACTGTGAGATGCTGACCAAATACGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGAATAGAATGCCAGTTCAAGGCTCTCACCGTTTCTTCAGACAATGGTTGCGAGGGAGGTGAAAGGAATGGATCGTCAGAAGAAGAAGTGGATGCAAACGACCAGGGCATTGATCCGCAAGCAGAAGACAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAACCTGAAGCAGGAATTCATGAAGAAGCGGAAGAAAGGTAAGCTGCCGAAAGAGGCGAGGCAACAGCTACTGGATTGGTGGAGTAGACATCACAAATGGCCTTACCCTTCGGAGTCGCAGAAGTTGGCTCTTGCGCAGTCGACCGGTTTGGATCAGAAGCAGATAAACAACTGGTTTATAAATCAAAGGAAAAGGCATTGGAAGCCTTCTGAAGATATGCAGTTTGTGGTGATGGATGCACATCCCCAGTATTTCATGGACAGCGCCATGGGAAATCCTTTTCCCTTGGACATCACACCAGCCTTGCTCTGA 1062 47.83 IETMEGGANGATGLMAFGDNSNGLCSMMTMMHGMSAHHHPHLNSNAETNSPFLPLHSSTTNNHDQNRNSSSGSSFMVEDRQNNSSWCYFMDTHNNAENNSSSDVKAKIMAHPHYHRLLAAYLNCQKVGAPPEVVVKLEEACASVASMGHAGTGCLGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTVSSDNGCEGGERNGSSEEEVDANDQGIDPQAEDRELKGQLLRRYSGYLGNLKQEFMKKRKKGKLPKEARQQLLDWWSRHHKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAHPQYFMDSAMGNPFPLDITPALL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47367375 47369359 + Bda032700.1 Bda09g01593 13843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01593 353 ProSiteProfiles ELK domain profile. 236 256 IPR005539 GO:0003677
Bda09g01593 353 Pfam KNOX1 domain 104 142 IPR005540 GO:0003677|GO:0005634
Bda09g01593 353 MobiDBLite consensus disorder prediction 41 77 - -
Bda09g01593 353 SUPERFAMILY Homeodomain-like 258 332 IPR009057 -
Bda09g01593 353 ProSitePatterns 'Homeobox' domain signature. 294 317 IPR017970 GO:0000981|GO:0006355
Bda09g01593 353 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Bda09g01593 353 Gene3D - 254 325 - -
Bda09g01593 353 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 342 - -
Bda09g01593 353 SMART KNOX2_2 151 202 IPR005541 GO:0003677|GO:0005634
Bda09g01593 353 SMART KNOX1_2 102 146 IPR005540 GO:0003677|GO:0005634
Bda09g01593 353 SMART ELK_2 236 257 IPR005539 GO:0003677
Bda09g01593 353 CDD homeodomain 268 320 IPR001356 GO:0003677
Bda09g01593 353 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
Bda09g01593 353 MobiDBLite consensus disorder prediction 206 236 - -
Bda09g01593 353 Pfam KNOX2 domain 155 201 IPR005541 GO:0003677|GO:0005634
Bda09g01593 353 PANTHER - 5 342 - -
Bda09g01593 353 MobiDBLite consensus disorder prediction 38 77 - -
Bda09g01593 353 Pfam ELK domain 236 257 IPR005539 GO:0003677
Bda09g01593 353 SMART HOX_1 258 323 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00605 Bda-Chr1:33054749 Bda09g01593 Bda-Chr9:47367375 2.90E-90 dispersed
Bda07g00506 Bda-Chr7:6463810 Bda09g01593 Bda-Chr9:47367375 8.66E-27 dispersed
Bda09g01593 Bda-Chr9:47367375 Bda15g00550 Bda-Chr15:8647777 5.04E-84 dispersed
Bda01g00003 Bda-Chr1:279462 Bda09g01593 Bda-Chr9:47367375 6.02E-117 transposed
Bda14g00697 Bda-Chr14:5191751 Bda09g01593 Bda-Chr9:47367375 8.51E-119 transposed
Bda02g00923 Bda-Chr2:49460823 Bda09g01593 Bda-Chr9:47367375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16465 PF03791 KNOX2 4.90E-21 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01593 - - rcu:8277968 548.51