Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g01614 | GTTGTTTTGGAGAATGACTTGGTCAAGCTAACAATATCGAAACCTCAAGGGTACGTCACTAGCATTAAATATGGAGGAATGGACGTGTTAGATCTCCAGTCAAGCGAATCCGACAGAGGATATTGGGATATAAACTGGAGTTTGCCTGGTGGGAAGGACAGATACCAATTACTTAAGGGACTTGAATACAACGTGGTTCATTCGAGCAATGACCGAATAGAAGTATCATTCCAGACTGTCTATAAACCATCCATGTCAACCAACAAACTGCCACTCAGTGTAGACATAAGATATATTTTGAGGAGTGGTGTTGCAGGCTTCTACAGCTATGCAATTTTCGAACGTCTGCCTCAATGTCCTGCTTTTGATCTTGTGCAGACGAGAATAATTTTTAAGCTTCGACAAGAGAAGTTCCATTACATGGCAATTTCAGACGAGAAGCAGAGAATAATGCCAGTGCCTGAGGATCTAAGGCCGGATAGAGGAAAACAGCTTATTGTTCCTGAATCAGTACTACTGGTGAATCCCACTAATCCTGATCTTAAAGGAGAGGTTGATGATAAATACCAGTATTCAATGGACAACAAAGACGGAGGAGTTCATGGTTGGATCAGCTCTGACCCGATTATAGGATTTTGGGTCATCTTTCCTAGCCATGAGTTCCGGAACGGCGGTCCAACTAAGCAAAATCTTACAGTGCACACGGGTCCATTCTGCCTCGCTATGTTCCATAGCTGTCACTACATTGGAGAAGATATAGTGGCTCATTTTGAAGAGGGAGAGACGTGGAAGAAGGTTTTTGGCCCTATCTTCGTGTACCTTAACTCGACTTCTCATGTATCAGATGCATACAATCTATGGATAGATGCAAAAAAACAGAGGGTGTCCGAGGAGGCTGCATGGCCCTATGATTTTGTGTCTTCCTCATATTATCTTACTGCAAATGAGCGTGGATCCTATATTTTGATTCATACTATGCGTAGGTATATTTCTGGTTCTCTCATTCCAGCCAAGTATGCATATGTTGGTTTGTCAGCTGCCACAAGTGAAGGAACCTGGCAAACAGAAAGCAAGGATTATCAGTTTTGGATACAAACAGACTCCAACGGAAACTTCACCATCAAGAATGTTGTTCCTGGAGTCTATGGGCTGCACGGTTGGGTACCTGGATTCATCGGCGATTACCTCCAAAAATCTCTTGTAACAATCTCTGCAGCAACGCAGATAGAACTTGGCAATTTGATCTATGTTCCGATCAGAGATGGGCCTACTTTGTGGGAGATAGGCTTTCCTGATCGTACGGCAATCGGTTTCTACGTTCCCGACGTGAATCCAATGTACGTTAATAAGCTATTTGTCAACAGCCCTGAAAAGTTCAGACAGTATGGAATGTGGGATAGATATAGTGATATGTATCCTAAGTACGATCTAGTTTTCACCGTAGCCGTCGACGATCCCAAAAAGGACTGGTTCTTTGCCCAAGTTACAGGTTTCATAGGGGAAGCTAACTATCTTCCCTGTACTTGGACCATCAAATTCAACCTCATCTCAGTTTCTGATGGAACCTACAAATTAAGATTGGCGACTGCATCAGTTACCCGCTCGGATCTGCAGATTTACGTGAACGTGATGAACACCGGACACCTGGTTTTCGAGGAGACTAATATAGGGGCCGACAACGCTGTTTGCCGGCATGGAATTCATGGACTGTATCGGCTTTTCAGCGTGGATATTCCTCGGGTGTTGCTGGTCAACGGAGATAACAGCATTTATCTCACACAAGCAAGGGGTGGAGATGCACTCTGTGGGATTCTGTATGATTATTTAAGACTAGAAGCTCCGGCCCCCTCTTAG | 1854 | 44.01 | VVLENDLVKLTISKPQGYVTSIKYGGMDVLDLQSSESDRGYWDINWSLPGGKDRYQLLKGLEYNVVHSSNDRIEVSFQTVYKPSMSTNKLPLSVDIRYILRSGVAGFYSYAIFERLPQCPAFDLVQTRIIFKLRQEKFHYMAISDEKQRIMPVPEDLRPDRGKQLIVPESVLLVNPTNPDLKGEVDDKYQYSMDNKDGGVHGWISSDPIIGFWVIFPSHEFRNGGPTKQNLTVHTGPFCLAMFHSCHYIGEDIVAHFEEGETWKKVFGPIFVYLNSTSHVSDAYNLWIDAKKQRVSEEAAWPYDFVSSSYYLTANERGSYILIHTMRRYISGSLIPAKYAYVGLSAATSEGTWQTESKDYQFWIQTDSNGNFTIKNVVPGVYGLHGWVPGFIGDYLQKSLVTISAATQIELGNLIYVPIRDGPTLWEIGFPDRTAIGFYVPDVNPMYVNKLFVNSPEKFRQYGMWDRYSDMYPKYDLVFTVAVDDPKKDWFFAQVTGFIGEANYLPCTWTIKFNLISVSDGTYKLRLATASVTRSDLQIYVNVMNTGHLVFEETNIGADNAVCRHGIHGLYRLFSVDIPRVLLVNGDNSIYLTQARGGDALCGILYDYLRLEAPAPS | 617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 47617239 | 47620114 | + | Bda032727.1 | Bda09g01614 | 13864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g01614 | 617 | CDD | RGL4_M | 335 | 414 | IPR029413 | - | |
Bda09g01614 | 617 | CDD | RGL4_C | 426 | 612 | - | - | |
Bda09g01614 | 617 | Pfam | Rhamnogalacturonate lyase family | 1 | 185 | IPR010325 | - | |
Bda09g01614 | 617 | PANTHER | POLYSACCHARIDE LYASE FAMILY 4 PROTEIN | 4 | 615 | - | - | |
Bda09g01614 | 617 | SUPERFAMILY | Galactose-binding domain-like | 421 | 612 | IPR008979 | - | |
Bda09g01614 | 617 | Gene3D | - | 329 | 411 | - | - | |
Bda09g01614 | 617 | Gene3D | - | 1 | 285 | IPR014718 | GO:0030246 | |
Bda09g01614 | 617 | SUPERFAMILY | Starch-binding domain-like | 358 | 410 | IPR013784 | GO:0030246 | |
Bda09g01614 | 617 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 615 | - | - | |
Bda09g01614 | 617 | Pfam | Polysaccharide lyase family 4, domain III | 424 | 611 | IPR029411 | - | |
Bda09g01614 | 617 | SUPERFAMILY | Galactose mutarotase-like | 4 | 282 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Bda09g01614 | 617 | Pfam | Polysaccharide lyase family 4, domain II | 339 | 410 | IPR029413 | - | |
Bda09g01614 | 617 | CDD | RGL4_N | 1 | 283 | - | - | |
Bda09g01614 | 617 | Gene3D | - | 422 | 612 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda09g01614 | Bda-Chr9:47617239 | Bda13g01367 | Bda-Chr13:36229677 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g01614 | K18195 | - | pvy:116142949 | 991.875 |