Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01616 ATGTCTTGTTCAAGCCTCACGGTTTGGATGTCTTCCAAACCCAACTCTTGTCTCTCCGACGCCTCCTCCCTCTCCTTCCGCTCTTCTCTCAACCCTTTTCAGTATCCCTCCCACTCCTCCTCCCCCTCCCACTCTTCTCGCTCTTCATCTCTTCTTCCCCCCATTCACTGCGGTCTCCGTGATCTTCGAGATCGAATCGATTCCGTTAAGAATACTCAGAAGATTACTGAGGCCATGAAGCTCGTTGCTGCTGCTAAAGTCCGACGAGCTCAAGAAGCAGTCGTCAACGGACGACCCTTCTCTGAAACTCTCGTCGAAGTTCTTTACAACATCAACGAGCAGCTCCAAACAGACGACGTAAATGTTCCTCTCACCAATGTTAGACCCGTTAAGAAGGTCGCTCTAGTTGTCGTCACCGGAGATCGGGGGCTATGCGGCGGTTTCAATAATTTCATCATCAAAAAGGCTGAAGCCAGGATTGCGGAATTGAAAACTCTTGGCGTTTCCTATACAGTGATTAGCGTGGGCAAGAAGGGCAACTCCTATTTCCTCCGCCGCCCTTATATTCCGGTGGATAGGTTCCTCGAAGGTGGCTCCCTTCCGACCGCTAAAGAAGCACAGGCTATCGCGGACGACGTCTTCTCGCTATTCGTGAGCGAAGAAGTGGACAAGGTGGAGCTTTTGTACACCAAATTCGTGTCCCTGGTAAAGTCGGATCCGGTGATCCACACGCTGCTTCCCCTTTCGCCCAAGGGAGAGATCTGCGACGTGAACGGCGTCTGTGTGGATGCCGCCGAGGATGAGTTCTTCAGGTTAACGACCAAAGAGGGAAAACTGACGGTGGAGAGAGATGTTGTGAGAACAAAAACAGCCGACTTCTCCCCCATTCTACAGTTCGAGCAAGATCCAGTTCAGATACTGGACGCTCTACTCCCTCTCTATTTGAACAGTCAGATTCTAAGGGCGCTGCAAGAATCGTTGGCGAGCGAGCTGGCGGCCAGAATGAGCGCCATGAGCAGTGCATCAGACAACGCGACGGAGTTGAGGAAGACCCTCTCCATCGTATACAACAGACAGCGGCAAGCTAAAATCACGGGGGAGATTTTAGAGATCGTCGCTGGCGCAAACGCTCTAACGTAG 1140 51.93 MSCSSLTVWMSSKPNSCLSDASSLSFRSSLNPFQYPSHSSSPSHSSRSSSLLPPIHCGLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVNVPLTNVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIAELKTLGVSYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNATELRKTLSIVYNRQRQAKITGEILEIVAGANALT 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47632846 47633985 - Bda032730.1 Bda09g01616 13866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01616 379 Pfam ATP synthase 59 378 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 378 - -
Bda09g01616 379 PANTHER ATP SYNTHASE GAMMA CHAIN 1 378 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 Gene3D - 125 249 - -
Bda09g01616 379 PRINTS ATP synthase gamma subunit signature 325 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 PRINTS ATP synthase gamma subunit signature 356 377 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 PRINTS ATP synthase gamma subunit signature 130 149 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 PRINTS ATP synthase gamma subunit signature 223 240 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 Gene3D ATP synthase, gamma subunit, helix hairpin domain 57 124 - -
Bda09g01616 379 Gene3D ATP synthase, gamma subunit, helix hairpin domain 275 378 - -
Bda09g01616 379 ProSitePatterns ATP synthase gamma subunit signature. 364 377 IPR023632 -
Bda09g01616 379 CDD F1-ATPase_gamma 59 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 Hamap ATP synthase gamma chain [atpG]. 56 378 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 58 378 IPR000131 GO:0015986|GO:0045261|GO:0046933
Bda09g01616 379 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 58 378 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01068 Bda-Chr4:61683753 Bda09g01616 Bda-Chr9:47632846 5.89E-37 dispersed
Bda09g01616 Bda-Chr9:47632846 Bda15g00621 Bda-Chr15:9382778 8.41E-26 dispersed
Bda09g01616 Bda-Chr9:47632846 Bda13g00782 Bda-Chr13:9337359 5.17E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01616 K02115 - ming:122058724 590.497