Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01621 ATGTTTCAGCCAAACATATTTGGAAGTCACCATCACATGTTGAACATGACACACAAAACCTCCGGAAGGGAAATGGCAATCGTTGGGGATGATGTTTTTGAGGCTAAATCAGGCACTGAAATCATGGAAGCTGCTTCAGGAGACGAACAAGATCCTGATCAACCTCCCAGAAAGAAGCGTTACAATCGTCATACCCAACTTCAAATTCAGGAAATGGAAGACTTTTTCAAGAAATGTCCTCACCCTGATGAGAAGAAAAGAAAGGAGTTGGGACGTCAGCTCGGTCTGAAACCTTTGCAGGTCAAATTTTGGTTCCAGAATAAGCGCACCCAGATGAAGGCCCAACATGAACGCCATGAGAACGCTATTTTGAAAGCCGAGAATGAAAAGTTTCGCGCCGAGAACAAAAGGTACATGGACGCTTTCAGCAATGCCTCATGCCCCAACTGCGGAGGCCCGGCTGCTATGGGTGAGATGTCGTTTGACGACCATCATTTAAGGATTGAAAATGTCCGACTGCGAGAAGAGGTTGATGGAATGGCTCCTAAATACGGAGGCAGACCTTTTGCCTCGTACAACCACAGCCAATCTGATGTTGGAGTTGGTGGTTTTCGTGGGAATTCAGGCTACGTGTACGGAGCGAACGAACTTGTCATGCCGATGTCCAGGCCTACGGAGGCTGATAAACCTGTGATCGTCGAGCTTGCTGTTGCAGCTATGGAAGAGCTAATCAGCATGGCTGAAAAGGGACAGCCTTTGTGGATACCAGCTGGTGATAATGCCTCCGAGATACTGAATGAAGAAGAATATCTCAAGCTTTTCCCAAGAGAAATTTGCTCAAAAACTTCGGTCTTAAGAACCGAAGCTTCACGGCAATCCGCAGTCGTCATCATGAACCACATTAAGCTCATTGAGATTTTCATGGACGTGAATAAATGGTCAACTGTATTTTGTGGTATTGTTTCAAGAGCACTTCTCCTGGAAGTCCTATCAACTGGAGTTGCTGGAAACCGAAATGGAGCCCTACAAGTGATCACAGCTGAATTCCAGGTCCCTACGCCGCTAGTTCCGACCAGGGAAAATTACATGGTCAGGTACTGCAAGAAGCATGGAGATGGGACTTGGGCTATCGTCGACGTTTCGCTCGATACTTTACGCCCAACCTCTGTGCCAAAGATCAGTCGAAGAAGACCATCTGGATGCTTGATCCAAGAACTTCCAAATGGCTTCTCCAAGGTGACGTGGGTCGAACACGTAGAAGAAGATATCAGAGCCGTTCATAATCTCTACCAATCACTTGTTAGTTCTGGGCTTGCTTTTGGAGCCACGCGATGGGTGGCTACGTTAGATCGACAGTGCGAACGTCTTGCAAGCTCCATGGCCAACGACATCGCTGCTGGAGATTTACGAATATTGACAAACCCAGAAGGGAGGAAGAGCATGGTGAAGCTGGCAGAGAGAATGGTGATGACCTTTTGCAGTGGGGTGGGTGCTTCAACAGCACACGCATGGACAACGTTGCCTACGATTGGCTCGGACGATGTTAGAGTCATGTCTAGAAAAAGCACGGATGGTTCAGGAAGGCCTCTCGGCATTGTTCTAAGCGCTGTCACTTCCTTCTGGATGCCAGTTCCACCTCAAAGAGTTTTCGATTTCCTTCGAAATTATAATTCAAGAAACCAGTGGGATATTCTATCCAACGGGGGCCTAGTTCAAGAAATGGCATACATTTCCAATGGTCGTCACGCCGGAAACTGCGTCTCCCTACTGCGAGTCAACAGCGCAAACTCAAGCCAGAGCAACATGCTGATTTTACAAGAAAGTTGCACGGATTCAACAGGGTGTTACGTCATTTATGCCCCAGTTGATATTGCAGCCATGAATGTGGTCTTAAATGGAGGCGACCCAGATTACTCAGCGCTTCTTCCTTCTGGATTTGCCATCCTTCCTGACGGGCCTGGACGTGCAGGAGATGGTGTTACTGAGGTCGTGTCCGGTGGCTCTTTGCTGACAGTGGCATTTCAAATCTTGGTCGATTCCGTCCCAACGTCCAAGATTTCGCTGGGATCGATTGCTACTGTAAACAGTCTTATTAAATGCACTGTTCAAAGGATCAGAACTGCCGTCACATGCGAGAATCCATGA 2145 47.69 MFQPNIFGSHHHMLNMTHKTSGREMAIVGDDVFEAKSGTEIMEAASGDEQDPDQPPRKKRYNRHTQLQIQEMEDFFKKCPHPDEKKRKELGRQLGLKPLQVKFWFQNKRTQMKAQHERHENAILKAENEKFRAENKRYMDAFSNASCPNCGGPAAMGEMSFDDHHLRIENVRLREEVDGMAPKYGGRPFASYNHSQSDVGVGGFRGNSGYVYGANELVMPMSRPTEADKPVIVELAVAAMEELISMAEKGQPLWIPAGDNASEILNEEEYLKLFPREICSKTSVLRTEASRQSAVVIMNHIKLIEIFMDVNKWSTVFCGIVSRALLLEVLSTGVAGNRNGALQVITAEFQVPTPLVPTRENYMVRYCKKHGDGTWAIVDVSLDTLRPTSVPKISRRRPSGCLIQELPNGFSKVTWVEHVEEDIRAVHNLYQSLVSSGLAFGATRWVATLDRQCERLASSMANDIAAGDLRILTNPEGRKSMVKLAERMVMTFCSGVGASTAHAWTTLPTIGSDDVRVMSRKSTDGSGRPLGIVLSAVTSFWMPVPPQRVFDFLRNYNSRNQWDILSNGGLVQEMAYISNGRHAGNCVSLLRVNSANSSQSNMLILQESCTDSTGCYVIYAPVDIAAMNVVLNGGDPDYSALLPSGFAILPDGPGRAGDGVTEVVSGGSLLTVAFQILVDSVPTSKISLGSIATVNSLIKCTVQRIRTAVTCENP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47661971 47664926 - Bda032735.1 Bda09g01621 13871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01621 714 Gene3D - 43 130 - -
Bda09g01621 714 SMART HOX_1 56 119 IPR001356 GO:0003677
Bda09g01621 714 Gene3D - 263 458 IPR023393 -
Bda09g01621 714 Coils Coil 109 141 - -
Bda09g01621 714 SUPERFAMILY Homeodomain-like 46 115 IPR009057 -
Bda09g01621 714 ProSiteProfiles START domain profile. 225 458 IPR002913 GO:0008289
Bda09g01621 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 13 711 - -
Bda09g01621 714 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Bda09g01621 714 SUPERFAMILY Bet v1-like 474 706 - -
Bda09g01621 714 CDD homeodomain 57 116 IPR001356 GO:0003677
Bda09g01621 714 Pfam START domain 235 455 IPR002913 GO:0008289
Bda09g01621 714 CDD START_ArGLABRA2_like 229 454 - -
Bda09g01621 714 SMART START_1 234 455 IPR002913 GO:0008289
Bda09g01621 714 SUPERFAMILY Bet v1-like 225 457 - -
Bda09g01621 714 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Bda09g01621 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 711 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01621 Bda-Chr9:47661971 Bda14g00713 Bda-Chr14:5378449 0 dispersed
Bda09g01621 Bda-Chr9:47661971 Bda13g00620 Bda-Chr13:7230664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16468 PF01852 START 1.50E-47 CL0209 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01621 K09338 - qsu:112016283 1080.86