Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01624 ATGTCCCCTGCCGATCCCCCTCTATCAGCCACCGGCGTCGGTCTCGGTTATGGTATTGCCATAGCCGTCAGTATTCTCGTCCTCATCTCCACCATAATGCTAGCTTCCTACGCCTGCGTCAGAGGCAAATCTACCACCGCCTATCGCAACAGAAGCGTCCGAGCCACTTCCGATGCCAACAGCGGTGTTACCAACGTGGCCATCCGCTCCCCCTTGGAGCCGGTGGTGGTGGTGGTGGTGGTGGTGGGCCTCGATAGGCCAATAATCGAGTCGTATCCGAAGGTGGTGTTGGGTGAGAGCCTTCGGTTTCCGACGCCTAACCAGAGGGTTTGCTCCATCTGCTTGGCCGACTACCGACCAAAAGATTGTCTGCGCTGCATTCCAGAATGTCATCACTGTTTCCACGCGGATTGCATTGACGAGTGGCTTCGGGTGAGCGGAACGTGTCCTCTGTGTAGAAATTCCCCTGCTCCGTCGCCTCTTGCATCCCCTGTTTCTGAGTTCGTCCCACTGGCTTTCCACGCCAGGTGA 531 57.25 MSPADPPLSATGVGLGYGIAIAVSILVLISTIMLASYACVRGKSTTAYRNRSVRATSDANSGVTNVAIRSPLEPVVVVVVVVGLDRPIIESYPKVVLGESLRFPTPNQRVCSICLADYRPKDCLRCIPECHHCFHADCIDEWLRVSGTCPLCRNSPAPSPLASPVSEFVPLAFHAR 176
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 47772653 47773183 - Bda032740.1 Bda09g01624 13874
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01624 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 158 IPR013083 -
Bda09g01624 176 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 16 159 - -
Bda09g01624 176 SMART ring_2 111 152 IPR001841 -
Bda09g01624 176 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 159 - -
Bda09g01624 176 SUPERFAMILY RING/U-box 110 157 - -
Bda09g01624 176 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Bda09g01624 176 Pfam Ring finger domain 111 153 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00419 Bda-Chr1:30723031 Bda09g01624 Bda-Chr9:47772653 9.61E-39 dispersed
Bda06g00147 Bda-Chr6:2176696 Bda09g01624 Bda-Chr9:47772653 1.55E-31 dispersed
Bda08g00137 Bda-Chr8:1288722 Bda09g01624 Bda-Chr9:47772653 1.18E-23 dispersed
Bda09g01624 Bda-Chr9:47772653 Bda13g00361 Bda-Chr13:4481199 1.52E-32 dispersed
Bda09g01624 Bda-Chr9:47772653 Bda08g00465 Bda-Chr8:4855970 1.01E-37 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01624 - - jre:109015741 219.164