Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda09g01624 | ATGTCCCCTGCCGATCCCCCTCTATCAGCCACCGGCGTCGGTCTCGGTTATGGTATTGCCATAGCCGTCAGTATTCTCGTCCTCATCTCCACCATAATGCTAGCTTCCTACGCCTGCGTCAGAGGCAAATCTACCACCGCCTATCGCAACAGAAGCGTCCGAGCCACTTCCGATGCCAACAGCGGTGTTACCAACGTGGCCATCCGCTCCCCCTTGGAGCCGGTGGTGGTGGTGGTGGTGGTGGTGGGCCTCGATAGGCCAATAATCGAGTCGTATCCGAAGGTGGTGTTGGGTGAGAGCCTTCGGTTTCCGACGCCTAACCAGAGGGTTTGCTCCATCTGCTTGGCCGACTACCGACCAAAAGATTGTCTGCGCTGCATTCCAGAATGTCATCACTGTTTCCACGCGGATTGCATTGACGAGTGGCTTCGGGTGAGCGGAACGTGTCCTCTGTGTAGAAATTCCCCTGCTCCGTCGCCTCTTGCATCCCCTGTTTCTGAGTTCGTCCCACTGGCTTTCCACGCCAGGTGA | 531 | 57.25 | MSPADPPLSATGVGLGYGIAIAVSILVLISTIMLASYACVRGKSTTAYRNRSVRATSDANSGVTNVAIRSPLEPVVVVVVVVGLDRPIIESYPKVVLGESLRFPTPNQRVCSICLADYRPKDCLRCIPECHHCFHADCIDEWLRVSGTCPLCRNSPAPSPLASPVSEFVPLAFHAR | 176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 47772653 | 47773183 | - | Bda032740.1 | Bda09g01624 | 13874 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda09g01624 | 176 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 158 | IPR013083 | - | |
| Bda09g01624 | 176 | PANTHER | RING-H2 FINGER PROTEIN ATL69-RELATED | 16 | 159 | - | - | |
| Bda09g01624 | 176 | SMART | ring_2 | 111 | 152 | IPR001841 | - | |
| Bda09g01624 | 176 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 16 | 159 | - | - | |
| Bda09g01624 | 176 | SUPERFAMILY | RING/U-box | 110 | 157 | - | - | |
| Bda09g01624 | 176 | ProSiteProfiles | Zinc finger RING-type profile. | 111 | 153 | IPR001841 | - | |
| Bda09g01624 | 176 | Pfam | Ring finger domain | 111 | 153 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00419 | Bda-Chr1:30723031 | Bda09g01624 | Bda-Chr9:47772653 | 9.61E-39 | dispersed | |
| Bda06g00147 | Bda-Chr6:2176696 | Bda09g01624 | Bda-Chr9:47772653 | 1.55E-31 | dispersed | |
| Bda08g00137 | Bda-Chr8:1288722 | Bda09g01624 | Bda-Chr9:47772653 | 1.18E-23 | dispersed | |
| Bda09g01624 | Bda-Chr9:47772653 | Bda13g00361 | Bda-Chr13:4481199 | 1.52E-32 | dispersed | |
| Bda09g01624 | Bda-Chr9:47772653 | Bda08g00465 | Bda-Chr8:4855970 | 1.01E-37 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda09g01624 | - | - | jre:109015741 | 219.164 |