Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00002 ATGAGTTGCAATGGCTGCCGTGTTCTTCGAAAGGGTTGCAGTGAGTCCTGTATTCTTCGCCCCTGTTTGCAGTGGATTCCGACTCCCGAGGCTCAGGGCCACGCCACTGTCTTCGTCGCCAAGTTCTTCGGTCGCGCTGGTCTCATCTCTTTAATCTCTGCCGTCCCCGAGTCTCAGCGACCTTGTATGCTTCTTTTTAATTTCTTCTCGCTGTTTCAGTCTTTGTTGTTCGAGGCATGTGGACGGACAGTTAATCCTGTGAGCGGAGCTGTGGGGCTCCTCTGGACTGGAAACTGGAACGTCTGCCAGACAGCTGTCGAGACCGTCCTAGGAGGCGGAACGCTGCGCACCATCCCTAATATGGTCGCCGGAGGGTCTCCTGCTCCGCCTTCGGACGAGGATTCCGAGGACGAAGTTGTCTGTACAGACATGTGGAAGCTACAAGAATGGAAACCGAATTCCAGGTTTTCCAATTCGCGATCCAGGCCCTTGATCAAACGCAAACGTACGGATGAAGTGGCGAAGCTTCCACTGACGGATCTAGATCTTCGCCTCACGTCAGGTTTACCGGCGAAAATGTCATGTGAACTCCAGCGGCCGGAAACTCCGTCTAGGAATTCGGAGGAGTCCGTAACCACTTCGTGCATCGAATTGGATTTAGGCGACGGGAAGGGTGATGTGGGAAATGAAAAGCTTCTGAATTTGTTCATCTGA 714 53.08 MSCNGCRVLRKGCSESCILRPCLQWIPTPEAQGHATVFVAKFFGRAGLISLISAVPESQRPCMLLFNFFSLFQSLLFEACGRTVNPVSGAVGLLWTGNWNVCQTAVETVLGGGTLRTIPNMVAGGSPAPPSDEDSEDEVVCTDMWKLQEWKPNSRFSNSRSRPLIKRKRTDEVAKLPLTDLDLRLTSGLPAKMSCELQRPETPSRNSEESVTTSCIELDLGDGKGDVGNEKLLNLFI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 51782 52556 - Bda006418.1 Bda10g00002 13890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00002 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 237 - -
Bda10g00002 237 Pfam Lateral organ boundaries (LOB) domain 2 108 IPR004883 -
Bda10g00002 237 ProSiteProfiles LOB domain profile. 1 115 IPR004883 -
Bda10g00002 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00002 Bda-Chr10:51782 Bda11g01472 Bda-Chr11:21231420 2.49E-95 dispersed
Bda10g00002 Bda-Chr10:51782 Bda08g01358 Bda-Chr8:54032646 3.80E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16469 PF03195 LOB 2.70E-21 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00002 - - zju:107424931 315.079