Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00010 ATGGGGAAGAAGCAGCACAGTAAAGATCGGATGTTCATCACCAAAACTGAGTGGGCTACCGAATGGGGTGGCGCCAAAGCCAAAGATACGCAAACCCCCTTTAAACGTCTTCCCTTCTACTGCTGCGCGCTGACATTCACGCCGTTCGAAGACCCAGCGTGTACTGCCGATGGCAGTGTCTTTGATGTCATGAACATAATCCCTTATATCCGTAAGTATGGCAAACATCCGGTTACAGGAGTGCCGCTGAAGCAGGTGGATCTCATCCCCCTAACTTTCCACAAGAATTCCGAAGGAGAGTATCATTGTCCTGTACTAAACAAGGTTTTTACGGAATTTACACACATAGTTGCCGTGAAGACCACAGGAAATGTCTTTTGCTACGAGGCAATCAAAGAATTAAATATTAAGACAAAGAACTGGAAGGAGCTCCTTACTGATGAATCATTCACTAAGGAAGACCTTATCACAATTCAGAATCCTAATGCCCTTGACAGCAAGGCCCTTCTGGGATTTGATCATGTAAAAAATAATCTGAAAGTTGATGATGAAGAACTGAAGAAAATGAGTATAGATCCTGCCTATAATATTAACGTTTCTGGAGATATCAAGCAGATGCTTGAGGAGCTTGGAACTGCAAAAGGAAAGGAAACTGCCCTTCATGGAGGAGGTGGTAACAAGGCACAGAAAGAAAGGGCTGCTGCACTTGCTTCCATTTTAGCTGCAAGATCAAATATTAAAGAGGATTTAAATTCAAATGGAGAGGTCAATGCCCGCCAAGGATACAGTATTGTAGATGCTGCATCTGCTTCAGTTCAAGGTAGAAGTGCTGCTGCTGCTAAAGCAGCATCAAGTGATAAAACTGCTGCTAGGATAGCTATGCACATGGCAGGTGAAAGAGCACCTGTTAATGCAAAGATGGTAAAAAGTCGCTATACAACTGGTGCTGCTTCACGGTCCTTTACTTCAACATCTTATGATCCTGTTACTAAGAACGACTTTGAATACATAAAAGTTGAGAAGAATCCAAAGAAGAAAGGATATGTACAGTTGCATACCACACATGGAGATTTGAATATTCAGTTGCATTGTGATATTTCACCTAGAGCTTGTGAGAACTTCATCACTCTTTGTGAGCGCGGTTATTATGATGGCGTAGCTTTTCATAGAAGCATCCGGAATTTCATGATTCAAGGTGGTGATCCAACTGGAAGTGGGAAAGGAGGAGAATCTATTTGGGGAAAACCATTTAAAGATGAATTCAACTCTAAGTTGGTTCACTCTGGACGAGGTGTAGTCAGCATGGCGAACAGTGGTCCCCACACCAATGGTTCTCAGTTCTTTATCCTTTACAAATCTGCAAATCACTTAAACTTCAAGCATACAGTATTTGGTGGAGTTGTAGGTAACTTGACTACTCTGGCAGCCATGGAAAAGGTTCCAGTCGATGATGACGACCGACCTATGGAGGAAATTAAAATAACAAGTGTCACAATTTTTGTCAATCCTTACACAGAACCCGACGAAGAAGAGGAAGAAGAGGCCAAAGAAGAGAAGAATGCTCTGGATGAAGATAATGATAAAGTTGGATCATGGTATAGTAATCCCGGTACGGGAGCAGCGGATACCCAAGCGGTAAGCAGTGGTGGCGGGGGTGTTGGCAAATACTTGAAAGCTAGAAATGGCAAAGCTGAATCTTCCAAAGTTGAGGCAAGTAGTGAAGTAGAAGCAAATACTAGAAAAAAGAGAAAAGTTGGAGTCTCCACGGCAGAATTCAAAGACTTCTCTTCATGGTAA 1797 42.63 MGKKQHSKDRMFITKTEWATEWGGAKAKDTQTPFKRLPFYCCALTFTPFEDPACTADGSVFDVMNIIPYIRKYGKHPVTGVPLKQVDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAIKELNIKTKNWKELLTDESFTKEDLITIQNPNALDSKALLGFDHVKNNLKVDDEELKKMSIDPAYNINVSGDIKQMLEELGTAKGKETALHGGGGNKAQKERAAALASILAARSNIKEDLNSNGEVNARQGYSIVDAASASVQGRSAAAAKAASSDKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDFEYIKVEKNPKKKGYVQLHTTHGDLNIQLHCDISPRACENFITLCERGYYDGVAFHRSIRNFMIQGGDPTGSGKGGESIWGKPFKDEFNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGNLTTLAAMEKVPVDDDDRPMEEIKITSVTIFVNPYTEPDEEEEEEAKEEKNALDEDNDKVGSWYSNPGTGAADTQAVSSGGGGVGKYLKARNGKAESSKVEASSEVEANTRKKRKVGVSTAEFKDFSSW 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 245330 253932 - Bda006428.1 Bda10g00010 13898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00010 598 MobiDBLite consensus disorder prediction 531 545 - -
Bda10g00010 598 MobiDBLite consensus disorder prediction 503 586 - -
Bda10g00010 598 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 596 IPR044666 -
Bda10g00010 598 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 348 498 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 Coils Coil 508 528 - -
Bda10g00010 598 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Bda10g00010 598 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 383 400 IPR020892 GO:0003755|GO:0006457
Bda10g00010 598 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 352 499 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 Gene3D - 328 513 IPR029000 -
Bda10g00010 598 CDD cyclophilin_RING 348 505 - -
Bda10g00010 598 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Bda10g00010 598 SUPERFAMILY RING/U-box 37 104 - -
Bda10g00010 598 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 596 - -
Bda10g00010 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Bda10g00010 598 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Bda10g00010 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 446 458 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 362 377 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 431 446 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 459 474 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 388 400 IPR002130 GO:0000413|GO:0003755
Bda10g00010 598 MobiDBLite consensus disorder prediction 561 586 - -
Bda10g00010 598 MobiDBLite consensus disorder prediction 505 520 - -
Bda10g00010 598 SUPERFAMILY Cyclophilin-like 348 508 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00628 Bda-Chr1:33278747 Bda10g00010 Bda-Chr10:245330 2.79E-46 dispersed
Bda10g00010 Bda-Chr10:245330 Bda11g00283 Bda-Chr11:3256122 5.52E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00010 K10598 - jre:109002463 991.875