Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00018 AGAAGAAAAGCAACATTGAAGAAGATGAATAATGATAATGGAAACAGCACCTGGTTGGGAATGGGATTCTCTCTTTCATCTTCTTCTTCTTCTTCCTCTTCTTCAAATCTTCTTAAAAATCAACAAATCCACACCCACCCTTCTTCTTCTTCTTCGTCCTCCTCCGCCCTTCTTCCGCCTTCAAACCTATTCCTTTCTCCATCACAGCTCAACTATGGATCGGTTGCCTGTGAAAATGGAGCCTTCTACTCTCCTTTGTCTTTGATGCCTCTCAATTCTGATGGATCTCTATGTATAATGGAAGCTCTCACCAGTCTCAAGTCTCCGAAGTTGGAAGATTTCTTTGGTGCTGCAACAATGGCCGCCCATCACTATGAAGGTCACCGCCATCATAATGAAGCTCAGATTGAAACCCAGAACTTGAGTTACTATTCTGAGCTTTTCCAAGAACCAAAAATGTGCCAGATTGGCGAGTGCAATCTGCAGAGACCAACGATGGCGGAAAATGAGGCGTCTGGTTTGAAAAACTGGGTTCTTGCAATGAGTCCGAGCTCTCAATCAAGCTGCGTGACTGGTTCACAGCTACTTTCATCTTCTGCAGCTGACTGTGTAGCCATGGAGACGAAGAAGAGAGGAGCTGAGAAAATGGGCCAAAAGCTAGTTGTTCATCGGAAATCGTTGGATACATTTGGGCAAAGAACGTCTCAGTATAGAGGCGTTACGAGACATAGGTGGACTGGTAGATATGAAGCTCATTTATGGGATAACAGTTGTAAGAAAGAGGGACAAAGCAGGAAAGGAAGACAAGGTGGGTATGATGTGGAAGAGAAGGCTGCTAAAGCTTATGATCTTGCTGCCATTAAGTATTGGGGACCCTCAACTCACATTAACTTCCCTGTTGAAACTTACCAGAAAGAGATCGAGGAGATGAAGAACATGACAAGACAGGAGTACGTTGCTCATCTTAGAAGAAAGAGTAGTGGATTCTCTAGAGGAGCTTCCATTTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTCGGATTGGAAGAGTTGCTGGAAATAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCCTATGATGTCGCCGCCATTAAATTCAGAGGCTTAAACGCTGTGACCAACTTCGACATTGCAAGATACGCAGTGGAGAGGATAATGGAGAGCAATACCCTCCTCGCCGGAGACTCAGCAAAGCGTAATAAGGGAATCGAAGCTGGAACAGAGCCGAGTATCAACGGAGAAGAGGGTGTAGGTTTGATCTTGCAGCGGAGCTCAAATGGCGGCGAGAAAATGGTGGGCTATCCGTCCTCTCCAGGCTTAGAAAAATTTGCACATTCGATTTCCCCAGTTTTTGCTGCTTGGGCAGATGCTTGA 1425 45.26 RRKATLKKMNNDNGNSTWLGMGFSLSSSSSSSSSSNLLKNQQIHTHPSSSSSSSSALLPPSNLFLSPSQLNYGSVACENGAFYSPLSLMPLNSDGSLCIMEALTSLKSPKLEDFFGAATMAAHHYEGHRHHNEAQIETQNLSYYSELFQEPKMCQIGECNLQRPTMAENEASGLKNWVLAMSPSSQSSCVTGSQLLSSSAADCVAMETKKRGAEKMGQKLVVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDVEEKAAKAYDLAAIKYWGPSTHINFPVETYQKEIEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDIARYAVERIMESNTLLAGDSAKRNKGIEAGTEPSINGEEGVGLILQRSSNGGEKMVGYPSSPGLEKFAHSISPVFAAWADA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 354206 356317 + Bda006437.1 Bda10g00018 13906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00018 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 131 - -
Bda10g00018 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 131 - -
Bda10g00018 474 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 CDD AP2 235 300 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 ProSiteProfiles AP2/ERF domain profile. 236 299 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 SUPERFAMILY DNA-binding domain 334 394 IPR016177 GO:0003677
Bda10g00018 474 CDD AP2 334 395 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 MobiDBLite consensus disorder prediction 34 55 - -
Bda10g00018 474 Gene3D AP2/ERF domain 335 395 IPR036955 GO:0003700|GO:0006355
Bda10g00018 474 Gene3D AP2/ERF domain 235 301 IPR036955 GO:0003700|GO:0006355
Bda10g00018 474 SUPERFAMILY DNA-binding domain 235 301 IPR016177 GO:0003677
Bda10g00018 474 Pfam AP2 domain 236 291 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 Pfam AP2 domain 335 385 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 SMART rav1_2 335 399 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 SMART rav1_2 236 305 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 172 422 - -
Bda10g00018 474 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700|GO:0006355
Bda10g00018 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 172 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00600 Bda-Chr1:33002327 Bda10g00018 Bda-Chr10:354206 8.65E-54 dispersed
Bda09g00309 Bda-Chr9:3852688 Bda10g00018 Bda-Chr10:354206 5.22E-09 dispersed
Bda09g00968 Bda-Chr9:38813225 Bda10g00018 Bda-Chr10:354206 5.12E-06 dispersed
Bda10g00018 Bda-Chr10:354206 Bda13g01680 Bda-Chr13:40175782 7.04E-07 dispersed
Bda12g01055 Bda-Chr12:42319295 Bda10g00018 Bda-Chr10:354206 1.79E-72 dispersed
Bda14g01250 Bda-Chr14:13001301 Bda10g00018 Bda-Chr10:354206 5.93E-48 dispersed
Bda14g01253 Bda-Chr14:13087803 Bda10g00018 Bda-Chr10:354206 6.38E-48 dispersed
Bda10g00018 Bda-Chr10:354206 Bda03g00160 Bda-Chr3:1319585 8.21E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16472 PF00847 AP2 4.50E-09 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00018 K09285 - zju:107424971 541.191