Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda10g00028 | ATGAAGCTGCTGCTGCTCCTCCTCCTCCTCCTTCATCTCTACTTTCCCCCTTCTCTCTCCGCTCGGATTTCCGAATATCGCGCTCTTCTCTCTCTTAAAACCTCCATTCTCCACGACCCCAATTCCTCCCTCTCCTCCTGGAAAAGCTCCACCGATCACTGCGCCTGGGCTGGCGTTTCTTGCGATTCCCGCCGCCGTGTTGTTGCTCTCGACCTCTCCGGCCTTAATCTCTCCGGCCTTCTTTCGCCTGATATTGCTCAACTTCCACTTCTCGCAAATCTTTCACTCGCCCTTAATCAGTTCTCCGGCCAACTTCCGCCGCAAATCTCGGCCCTCGCTGGGCTACGGTACCTGAACCTCTCCAACAATTATTTCAATGGTACATTCCCTGCTGACCTATCGCAGCTTAAGAACCTGCAGGTTTTGGATTTGTATAACAACAACATGACCGGAGATTTGCCTCTTGCCGTGACGGAACTGCCGAATCTCCAGCACTTGCATCTGGGAGGGAACTTTTTCCTCGGCCCGATTCCTGCCGAGTACGGTCGGTGGGAGTTTTTGGAGTATTTGGCGGTTTCTGGTAACGAGCTTGAAGGTCCTATTCCGCCGGAGATCGGAAACTTAGGTAAGCTTCGAGAACTCTACATTGGGTATTACAACAGCTTTGAGGGTAGTTTGCCTGCGGAGATTGGAAACTTGTCGTCGTTGGTTAGGTTCGATGCTGCCAACTGCGGGTTAACCGGTGAGATACCTCCGGAACTCGGAAAGCTTCAAAATCTCGATACTCTATTTCTTCAAGTGAATGCGCTGTCTGGGACTTTTCCCTCAGAACTTGGAATGTTAATGAAGTTGAAATCAATGGATTTGTCTAACAACATGCTAACCGGAGAGATTCCGGTTTCTTTCTCCGATCTAAAGAGCTTGACGCTGTTGAATCTGTTTAGAAACAGGCTGCACGGAGCGATTCCAGACTTCATCGGGGACTTGCCGGAGTTAGAAGTGTTGCAGTTGTGGGAGAATAATCTCACCGGTTGGATTCCTCAAGGTCTCGGAAAGAATGGCAAGCTTCAGCTTCTTGATCTTTCTTCTAACAAGCTTACCGGAACTCTTCCGCCGGACATGTGCTCCGGCAATCGCCTCCAGACTCTGATTACTTTGGGAAATTTCTTGTTCGGACCGATTCCGGAATCTCTCGGGAAATGCGAGTCGCTCAGTCGAATTCGAATGGGGGAAAATTTTCTGAATGGATCGATCCCGATCGGTCTCTTTAATTTGCCGAACCTTACTCAGGTCGAATTGCAGAACAACTTTCTCATAGGCGAGTTTCCGGTGACCGATTCGATATCAGTCAATCTGGGTCAGATTAGTCTGTCGAGCAATCAGCTTTCTGGGTCATTACCACCCTCTATCGGAAACTTCTCTGGCGTTCAAAAACTTCTTCTCTATGGAAATAACTTCTCCGGCCCAATACCGTCTGAGCTCGGAAAGTTACAACAGCTATCGAAGATAGATTTCAGCCACAACCAGTTCTCTGGTTCGATTGCACCAGAGATAAGCCAATGCAAGCTCCTCACGTTCGTTGATCTCAGTAGAAACGAGCTCTCCGGTCAGATTCCGGACGAGATTACCTCCATGAGGATACTGAATTATCTGAACCTCTCGAGAAACCATTTAGTTGGAAACGTTCCTTCTTCCATTGCCTCAATGCAGAGTTTAACTTCTGTAGATTTCTCATACAACAATCTCTCCGGTTTGGTTCCCGACTCCGGCCAATTCAGCTACTTCAATTCTACGTCATTTATGGGGAACCCAAACCTCTGCGGTCCATATTTAGGACCTTGCAAAAATGGAATCGCCAATTCCGATGAAAAACCCCACCTCTCAGTTTCTCTGAAGCTTCTGCTAGTCATCGGATTGCTTGTTTGCTCCATTGCGTTCGCCATTGCAGCAATTATGAAAGCTCGGTCACTTAAACGAGGGACTGAGGCTAGGGCATGGAAACTAACAGCTTTTCAACGCTTGGATTTTACAGCCGACGATGTTTTGGATTGCTTGAAAGAAGATAACATCATCGGAAAAGGAGGTGCCGGAATTGTTTACAAAGGGTCCATGCCAAACGGTGAGATCGTTGCCGTTAAACGACTTCCGGCAATGAGCCGTGGTTCTTCCCATGATCATGGATTTAATGCAGAGATTCAAACTCTGGGAAGGATTCGACATCGTCACATTGTTAGATTATTTGGGTTTTGTTCAAATCACGAGACAAATCTTCTGGTTTATGAATACATGCCCAATGGAAGCTTAGGCGAAGTTCTTCATGGCAAGAAAGGAGGACATTTACAGTGGAACACCAGATATAATATCGCAATCGAATCCGCCAAGGGTCTCTGCTATCTTCACCATGATTGTTCGCCGTTGATAGTTCATCGAGACGTGAAATCAAATAACATCTTGTTAGACTCCAGTTTCAAAGCTCATGTTGCAGATTTCGGCCTTGCCAAGTTCTTGCAGGACTCGGGTACTTCAGAGTGCATGTCCGCGATTGCCGGGTCTTACGGATACATCGCCCCAGAATATGCATACACTCTGAAGGTTGATGAGAAGAGCGACGTTTACAGTTTCGGTGTTGTCTTGTTAGAGCTGGTCAGTGGGAAAAAACCAGTCGGAGAATTCGGCGATGGTGTCGATATTGTCCAGTGGGTACGAAAAATGACAGATTCAAACAAGGAAGCAGTCGTCAAAATAATCGACCAGAGACTATCGGCTGTTCCTATCCACGAAATAATGCACGTCTTCTACGTCGCCTTGCTCTGCGTGGAAGATCAGGCAGTGGAGCGACCCACCATGCGGGAGGTCGTTCAGATCTTGACAGAGCTTCCTAAGCCTCCGAGCTCTAAACCTGGTGAAAATGGTCCGGCAATGGCGGACTCCTGTTCGAACTCTCACCCTCCTCCCGATCTTCTAAGCATTTGA | 2973 | 47.8 | MKLLLLLLLLLHLYFPPSLSARISEYRALLSLKTSILHDPNSSLSSWKSSTDHCAWAGVSCDSRRRVVALDLSGLNLSGLLSPDIAQLPLLANLSLALNQFSGQLPPQISALAGLRYLNLSNNYFNGTFPADLSQLKNLQVLDLYNNNMTGDLPLAVTELPNLQHLHLGGNFFLGPIPAEYGRWEFLEYLAVSGNELEGPIPPEIGNLGKLRELYIGYYNSFEGSLPAEIGNLSSLVRFDAANCGLTGEIPPELGKLQNLDTLFLQVNALSGTFPSELGMLMKLKSMDLSNNMLTGEIPVSFSDLKSLTLLNLFRNRLHGAIPDFIGDLPELEVLQLWENNLTGWIPQGLGKNGKLQLLDLSSNKLTGTLPPDMCSGNRLQTLITLGNFLFGPIPESLGKCESLSRIRMGENFLNGSIPIGLFNLPNLTQVELQNNFLIGEFPVTDSISVNLGQISLSSNQLSGSLPPSIGNFSGVQKLLLYGNNFSGPIPSELGKLQQLSKIDFSHNQFSGSIAPEISQCKLLTFVDLSRNELSGQIPDEITSMRILNYLNLSRNHLVGNVPSSIASMQSLTSVDFSYNNLSGLVPDSGQFSYFNSTSFMGNPNLCGPYLGPCKNGIANSDEKPHLSVSLKLLLVIGLLVCSIAFAIAAIMKARSLKRGTEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGSMPNGEIVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLFGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWNTRYNIAIESAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFKAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGKKPVGEFGDGVDIVQWVRKMTDSNKEAVVKIIDQRLSAVPIHEIMHVFYVALLCVEDQAVERPTMREVVQILTELPKPPSSKPGENGPAMADSCSNSHPPPDLLSI | 990 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 508517 | 511557 | - | Bda006447.1 | Bda10g00028 | 13916 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda10g00028 | 990 | Gene3D | Ribonuclease Inhibitor | 215 | 378 | IPR032675 | - | |
| Bda10g00028 | 990 | Gene3D | Ribonuclease Inhibitor | 380 | 502 | IPR032675 | - | |
| Bda10g00028 | 990 | Pfam | Leucine rich repeat | 259 | 318 | IPR001611 | GO:0005515 | |
| Bda10g00028 | 990 | Pfam | Leucine Rich repeats (2 copies) | 137 | 177 | IPR025875 | - | |
| Bda10g00028 | 990 | Gene3D | Ribonuclease Inhibitor | 503 | 614 | IPR032675 | - | |
| Bda10g00028 | 990 | ProSiteProfiles | Protein kinase domain profile. | 685 | 959 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda10g00028 | 990 | SMART | LRR_typ_2 | 112 | 136 | IPR003591 | - | |
| Bda10g00028 | 990 | SMART | LRR_typ_2 | 329 | 353 | IPR003591 | - | |
| Bda10g00028 | 990 | SMART | LRR_typ_2 | 354 | 377 | IPR003591 | - | |
| Bda10g00028 | 990 | SMART | LRR_typ_2 | 160 | 184 | IPR003591 | - | |
| Bda10g00028 | 990 | SMART | LRR_typ_2 | 569 | 592 | IPR003591 | - | |
| Bda10g00028 | 990 | SMART | LRR_typ_2 | 497 | 521 | IPR003591 | - | |
| Bda10g00028 | 990 | Gene3D | Phosphorylase Kinase; domain 1 | 655 | 762 | - | - | |
| Bda10g00028 | 990 | MobiDBLite | consensus disorder prediction | 974 | 990 | - | - | |
| Bda10g00028 | 990 | Pfam | Protein tyrosine and serine/threonine kinase | 687 | 956 | IPR001245 | GO:0004672|GO:0006468 | |
| Bda10g00028 | 990 | SMART | serkin_6 | 685 | 933 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda10g00028 | 990 | Pfam | Leucine rich repeat N-terminal domain | 24 | 62 | IPR013210 | - | |
| Bda10g00028 | 990 | Gene3D | Ribonuclease Inhibitor | 22 | 214 | IPR032675 | - | |
| Bda10g00028 | 990 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 3 | 980 | - | - | |
| Bda10g00028 | 990 | SUPERFAMILY | L domain-like | 298 | 616 | - | - | |
| Bda10g00028 | 990 | SUPERFAMILY | Protein kinase-like (PK-like) | 681 | 956 | IPR011009 | - | |
| Bda10g00028 | 990 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 3 | 980 | - | - | |
| Bda10g00028 | 990 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 807 | 819 | IPR008271 | GO:0004672|GO:0006468 | |
| Bda10g00028 | 990 | Gene3D | Transferase(Phosphotransferase) domain 1 | 763 | 968 | - | - | |
| Bda10g00028 | 990 | SUPERFAMILY | RNI-like | 70 | 391 | - | - | |
| Bda10g00028 | 990 | MobiDBLite | consensus disorder prediction | 958 | 990 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00445 | Bda-Chr3:3813730 | Bda10g00028 | Bda-Chr10:508517 | 4.39E-38 | dispersed | |
| Bda07g01663 | Bda-Chr7:30876669 | Bda10g00028 | Bda-Chr10:508517 | 0 | dispersed | |
| Bda10g00028 | Bda-Chr10:508517 | Bda12g00350 | Bda-Chr12:4028559 | 0 | dispersed | |
| Bda10g00028 | Bda-Chr10:508517 | Bda11g01541 | Bda-Chr11:47731550 | 0 | wgd | |
| Bda10g00028 | Bda-Chr10:508517 | Bda13g01341 | Bda-Chr13:35721352 | 4.19E-06 | wgd | |
| Bda10g00028 | Bda-Chr10:508517 | Bda04g00148 | Bda-Chr4:4062338 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 69839 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-46 | CL0016 | Bda | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda10g00028 | - | - | jre:108997702 | 1576.61 |