Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00030 ATGGAAATATCATCGGCGAAATTGTTTTGTGATATGGCTCAAATGGAGGAAGATTCTTCCTTTTTTCATCAATATTCTTTCGATTACAGTCAGGATGAGTTTAGTTTTCAGTCAGTTTCTGCTGAGAGCTACCCGAGAAGCACGACCAGCTTCTATGGCTGCTCAGCTGAAGCGTTTCCTCCATTGACGGCAGAATCTGAAAGACCAGCAAAGCAGCTCAAATCCAACGGCTGTAAACCATCCAAGCCCGCCTCTTCTTCCTCCTCCTCTCAAATCATCTCCTTTGGGAATTCAAATTCGTCTCAGAAGTCTTCTGGTTTGGAGCCTAAGATTGAGATAAACACCTCTTCTTCTCTCCTCGGCCATGGATCAAGCGAGAATATCCAGGGTCTGACGGAAAATAAAGGAACTAAGAGGGGTTTTGGGGCAGCCAGCAGGAGCCCTTTGCTTGCTCAAGATCATGTTTTAGCTGAGCGAAAGAGGAGAGAGAAACTCAGCCAGAGGTTCATCGCTCTTTCTGCTCTAATTCCTGGCCTGAAGAAGAATGATAAGGCTTCGGTTCTTCGAGACGCCATTGAACACGTGAAGCAGCTGCAGGAGCGTTTGAGGGAGATGGAGGAACAGGCAACGACGAAGACGATGGAATCCGTGGTTTTGGTGAAGAAAGCTCGTCTTTTTGCAGACGATAACGCTTCATCGGACGAAGAGTCAACAGGCTTTTCCGACCAAAACCTCCCGGAAATCGAGGCAAGAGTCTCCGACAAGGACGTTCTCGTTCGAATTCACTGTGAAAAACAAAACGGATTGTTGTCCCACACATTGAACGAAGTGGAGAAGCTTCATCTGTCAGTAGTTCATAGCAGTGCCTTGAAATTTGGCAAATCTACTCTTGATATCACCATTATTGCTAAGATGGAGGATGGATTCTGTATGACAGTGAAGGAAATGGCGAAGAATCTGAGAACTGCTTTGCTGAACTTCAATTCTGTTGAAGTTTGA 999 45.75 MEISSAKLFCDMAQMEEDSSFFHQYSFDYSQDEFSFQSVSAESYPRSTTSFYGCSAEAFPPLTAESERPAKQLKSNGCKPSKPASSSSSSQIISFGNSNSSQKSSGLEPKIEINTSSSLLGHGSSENIQGLTENKGTKRGFGAASRSPLLAQDHVLAERKRREKLSQRFIALSALIPGLKKNDKASVLRDAIEHVKQLQERLREMEEQATTKTMESVVLVKKARLFADDNASSDEESTGFSDQNLPEIEARVSDKDVLVRIHCEKQNGLLSHTLNEVEKLHLSVVHSSALKFGKSTLDITIIAKMEDGFCMTVKEMAKNLRTALLNFNSVEV 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 598516 599785 - Bda006450.1 Bda10g00030 13918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00030 332 Pfam Helix-loop-helix DNA-binding domain 154 199 IPR011598 GO:0046983
Bda10g00030 332 SMART finulus 155 204 IPR011598 GO:0046983
Bda10g00030 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Bda10g00030 332 CDD bHLH_AtNAI1_like 150 222 - -
Bda10g00030 332 Coils Coil 188 215 - -
Bda10g00030 332 MobiDBLite consensus disorder prediction 78 134 - -
Bda10g00030 332 MobiDBLite consensus disorder prediction 66 143 - -
Bda10g00030 332 PANTHER BHLH TRANSCRIPTION FACTOR 1 328 - -
Bda10g00030 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 216 IPR036638 GO:0046983
Bda10g00030 332 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 1 328 - -
Bda10g00030 332 Gene3D - 151 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00030 Bda-Chr10:598516 Bda07g00099 Bda-Chr7:1167675 2.25E-18 dispersed
Bda10g00030 Bda-Chr10:598516 Bda11g01542 Bda-Chr11:47840500 1.23E-74 wgd
Bda10g00030 Bda-Chr10:598516 Bda04g00147 Bda-Chr4:4033405 2.85E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16474 PF00010 HLH 2.20E-10 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00030 - - rcu:8288727 284.648