Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00040 ATGGAGCTTCCCCACAGCGCATTAATGGAGGATTTCCTCTCTCCACGAAGAGACTTGTGGAGTTCTTATTCGACCGCGTTGAATGAGTTGACCTTCCCTTACAATGGGTGGAGCCTCGTTTCTTCAGATGAAAACCCAGTAAATCTCTCCAATCCAGATTTTCTCGGCTACCAACAACCCTCTGATCCAAGTTATACTTTTCTAGACGGTTTTACAGTTTCAGAGCTCGATTCTTCGTTTATGGTTGACAATGGCGGAGTCCCACCGCCATTTCTACTGCAGGAAGATTACCCATCGGTGATAGAACAAGATGGGTTTGGCTTATTTGGGAGGGAAAATCAGAGTTCAGAAGAATTAAATAATAATGGCGGAAACAGAGAGGCAGAAGGTGTGTTTGTGGGTTTCAATGGGAAAAAGAGCAAGTCGAAGAAGATTGAAGGTCAGCCCTCCAAGAATTTAATGGCGGAAAGGAGAAGAAGAAAGCGTTTGAACGATCGGCTTTCCATGCTTAGATCAATAGTACCCAAGATAAGCAAGATGGACAGAACGTCGATACTTGGAGATGCAATAGATTACATGAGACTGCTTCTGCAGAAAATTACCGACTTGAAGGAAGGAGAAGATGAAGATTTACACCCAAATGAAGTTGCAGTAGCAAGAAGCAGCCCAAAGTTCGAGGTGGAGAAGAAAGAGAGCGAAACGAGGATCCAAGTCTGCTGTGCTTCCAGGCCAGGGTTGTTGCTGTCGACTTTAAGTACGTTAGAAGCATTTGGGCTGGAGATTCAACACTGTGTGATTAGCTGCTTCAATGATTTTTCAGTTCAAGCTTCTTGCTCCCAGGGAGGAGAGCAGGTATCGGTTGTGAGTTCCGACAATGTAAAGCAAGCACTGTTCCAAACTTCAGGGTATGTAGGAAGGTGTTTGTAG 927 44.77 MELPHSALMEDFLSPRRDLWSSYSTALNELTFPYNGWSLVSSDENPVNLSNPDFLGYQQPSDPSYTFLDGFTVSELDSSFMVDNGGVPPPFLLQEDYPSVIEQDGFGLFGRENQSSEELNNNGGNREAEGVFVGFNGKKSKSKKIEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMRLLLQKITDLKEGEDEDLHPNEVAVARSSPKFEVEKKESETRIQVCCASRPGLLLSTLSTLEAFGLEIQHCVISCFNDFSVQASCSQGGEQVSVVSSDNVKQALFQTSGYVGRCL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 918409 922748 - Bda006469.2 Bda10g00040 13928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00040 308 MobiDBLite consensus disorder prediction 139 158 - -
Bda10g00040 308 SMART finulus 153 202 IPR011598 GO:0046983
Bda10g00040 308 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 7 308 - -
Bda10g00040 308 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 7 308 - -
Bda10g00040 308 Pfam Helix-loop-helix DNA-binding domain 153 196 IPR011598 GO:0046983
Bda10g00040 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 209 IPR036638 GO:0046983
Bda10g00040 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Bda10g00040 308 Gene3D - 138 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00446 Bda-Chr3:3823985 Bda10g00040 Bda-Chr10:918409 1.63E-53 dispersed
Bda10g00040 Bda-Chr10:918409 Bda11g01575 Bda-Chr11:48947578 9.58E-35 dispersed
Bda10g00040 Bda-Chr10:918409 Bda07g00099 Bda-Chr7:1167675 1.08E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16476 PF00010 HLH 1.20E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00040 - - qsu:111992110 327.02