Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00123 ATGCCGACTGAGTTAGACAATTCCTCCACTGCTTCAGGCGAAGCTAGTGTTTCCTCCTCTGGAAATCAACCGCCACCTCCAAAATCAACAGCTAAGAAAAAGCGAAACTTACCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTTTGTGAAATTTGCAACAAGGGTTTTCAAAGGGATCAGAATTTGCAACTGCATCGAAGAGGTCATAATCTACCATGGAAGCTGAAGCAGCGATCGAGTAAGGAGGTAAAGAAGAAAGTGTATGTCTGCCCGGAGCCGTCGTGTGTCCACCACGATCCATCGAGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGCAGAAAACATGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTTCAGTCGGACTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTACAAGTGCGATTGCGGAACGTTGTTTTCCAGGAGGGATAGCTTCATCACCCACAGAGCTTTCTGCGATGCGTTGGCTGAGGAGAGCGCCAGAGCTCGAACTCATCCTCAACCCCCAACAATGGCGAATCCAAATTCCGAGTCCGACCCAACAGTCCCACCATCCCCATCTTCTTCAACTCCGGCGCCCCCTGCTCCTCCGCAGTCAACCAGGGCTGCCGTCTCCTCAGTTTTGCCGATTCAAAGTCAAGAGCTGCCGGAAAATCCCCCGCAAATTATCGAAGATGTAGCGGCAGCTGGAGCGGGATTAAACGGGAGTTGCAGCAGCAGTTCGAGCCCAAACAGCCATAGCTGCTCGAGCAGTAGTGTATTTGCGAGCTTGTTCGCTTCGTCAAATGCAGCAGTGAGCTTACCACCTCCTCAACCTCCTGCATTTACTGACCTGATAAGAGCCATGGGAAGGCCTGATCGGCCTGCAGAACTCGCTCTATCTTCATCCACTGAACCCATTTCTCTCTGCCTTTCAACTAGCCATCACGGGTCATCAGTTTTTGGGGCTGCAGGCCAATATCCACCTCCTCCACCTCCACAGCCGGCTATGTCAGCCACAGCCCTTCTTCAGAAGGCAGCTCAAATGGGGGCTGCAGCCACTAATGCATCATTTCTTCGAGGGTTTGGAGTAGTGGCCTCGACTTCGACCTCTACACAGCAGCAATGGAGTCAGAGGCAAGTCGATCCGGATTCCGCCTCAATAGCTGCAGGGCTCGGCCTGGGACTTCCTTATGATGGAAGTTCTGGATTGAAGGAACTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACTACGCTTGATTTTCTAGGTCTCGGAATGGCAGCCGGTGGAAGTCCAAGTGGCAGCCTCTCGGCACTAATCACGTCCATTGGTGGCGGTCTAGATGTGACAGCGGCAGCCTCCTTTGGAGGTGGTGAATTCTCTGGTAAAGACATTAGTAGAAACTCTTGA 1497 51.44 MPTELDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARARTHPQPPTMANPNSESDPTVPPSPSSSTPAPPAPPQSTRAAVSSVLPIQSQELPENPPQIIEDVAAAGAGLNGSCSSSSSPNSHSCSSSSVFASLFASSNAAVSLPPPQPPAFTDLIRAMGRPDRPAELALSSSTEPISLCLSTSHHGSSVFGAAGQYPPPPPPQPAMSATALLQKAAQMGAAATNASFLRGFGVVASTSTSTQQQWSQRQVDPDSASIAAGLGLGLPYDGSSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGGGLDVTAAASFGGGEFSGKDISRNS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3211502 3213607 - Bda006582.1 Bda10g00123 14011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00123 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bda10g00123 498 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bda10g00123 498 Gene3D Classic Zinc Finger 40 108 - -
Bda10g00123 498 SMART c2h2final6 61 83 IPR013087 -
Bda10g00123 498 SMART c2h2final6 102 132 IPR013087 -
Bda10g00123 498 SMART c2h2final6 137 157 IPR013087 -
Bda10g00123 498 MobiDBLite consensus disorder prediction 212 231 - -
Bda10g00123 498 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Bda10g00123 498 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 497 - -
Bda10g00123 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 497 - -
Bda10g00123 498 Gene3D Classic Zinc Finger 115 195 - -
Bda10g00123 498 MobiDBLite consensus disorder prediction 1 44 - -
Bda10g00123 498 MobiDBLite consensus disorder prediction 193 239 - -
Bda10g00123 498 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bda10g00123 498 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00061 Bda10g00123 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00123 Bda-Chr10:3211502 Bda12g01070 Bda-Chr12:42429856 3.42E-117 dispersed
Bda10g00123 Bda-Chr10:3211502 Bda10g00126 Bda-Chr10:3491616 0 proximal
Bda01g01773 Bda-Chr1:53969933 Bda10g00123 Bda-Chr10:3211502 6.84E-77 transposed
Bda03g00256 Bda-Chr3:2288639 Bda10g00123 Bda-Chr10:3211502 7.00E-166 transposed
Bda05g00334 Bda-Chr5:46957742 Bda10g00123 Bda-Chr10:3211502 1.12E-103 transposed
Bda06g00840 Bda-Chr6:11647348 Bda10g00123 Bda-Chr10:3211502 5.98E-70 transposed
Bda06g00859 Bda-Chr6:11818447 Bda10g00123 Bda-Chr10:3211502 6.11E-70 transposed
Bda10g00560 Bda-Chr10:39582000 Bda10g00123 Bda-Chr10:3211502 2.81E-114 transposed
Bda10g01154 Bda-Chr10:45605607 Bda10g00123 Bda-Chr10:3211502 4.54E-104 transposed
Bda10g00123 Bda-Chr10:3211502 Bda04g00061 Bda-Chr4:1006327 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16480 PF00096 zf-C2H2 0.005 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00123 K25869 - tcc:18610967 729.939