Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00126 ATGCCGACTGAGTTAGACAATTCCTCCACCGCTTCAGGCGAAGCTAGTGTTTCCTCCTCTGGAAATCAACCGCCACCTCCAAAATCAACAGCTAAGAAAAAGCGAAACTTACCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTTTGTGAAATTTGCAACAAGGGTTTTCAAAGGGATCAGAATTTGCAACTGCATCGAAGAGGTCATAATCTACCATGGAAGCTGAAGCAGCGATCGAGTAAGGAGGTAAAGAAGAAAGTGTATGTCTGCCCGGAGCCGTCGTGTGTCCACCACGATCCATCGAGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTTCAGTCGGACTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTACAAGTGCGATTGCGGAACGTTGTTTTCCAGGAGGGATAGCTTCATCACCCACAGAGCTTTCTGCGATGCGTTGGCTGAGGAGAGCGCCAGAGCTCGAACTCATCCTCAACCCCCAACAATGGCGAATCCAAATTCCGAGTCCGACCCAAAAGTCCCACCATCCCCATCTTCTTCAGCTCCGGCGCCCCCTGCTCCTCCGCAGTCAACCAGGGCTGCCGCCTCCTCAGTGTTGCCGATTCAAAGTCAAGAGCTGCCGGAAAATCCCCCGCAAATTATCGAAGATGTAGCGGCAGCTGGAGCGGGATTAAACGGGAGTTGCAGCAGCAGTTCGAGCCCAAGCAGCCATAGCTGCTCGAGCAGTAGTGTATTTGCGAGCTTGTTCGCTTCGTCAAATGCAGCAGTGAGCTTACCACCTCCTCAACCTCCTGCATTTACTGACCTGATAAGAGCCATGGGAAGGCCTGATCGGCCTGCAGAACTCGCTCTATCTTCACCCACCGAACCCATTTCTCTCTGCCTTTCAACTAGCCATCACGGGTCATCAGTTTTTGGCGCTGCAGGCCAATATCCACCTCCTCCACCTCCACAGCCGGCTATGTCAGCCACAGCCCTTCTTCAGAAGGCAGCTCAAATGGGGGCTGCAGCCACTAATGCATCATTTCTTCGAGGGTTTGGAGTAGTGGCCTCGACTTCAACCTCTACACAGCAGCAATGGAGTCAGAGGCAAGTCGATCCGGATTCCGCCTCAATAGCTGCAGGGCTCGGCCTGGGACTTCCTTATGATGGAAGTTCTGGATTGAAGGAACTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACCACGCTTGATTTTCTAGGTCTCGGAATGGCAGCCGGTGGAAGTCCAAGTGGCAGCCTCTCGGCACTAATCACGTCCATTGGTGGCGGTCTAGATGTGACAGCGGCAGCCTCCTTTGGAGGTGGTGAATTCTCTGGTAAAGACATTAGTAGAAACTCTTGA 1497 51.9 MPTELDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARARTHPQPPTMANPNSESDPKVPPSPSSSAPAPPAPPQSTRAAASSVLPIQSQELPENPPQIIEDVAAAGAGLNGSCSSSSSPSSHSCSSSSVFASLFASSNAAVSLPPPQPPAFTDLIRAMGRPDRPAELALSSPTEPISLCLSTSHHGSSVFGAAGQYPPPPPPQPAMSATALLQKAAQMGAAATNASFLRGFGVVASTSTSTQQQWSQRQVDPDSASIAAGLGLGLPYDGSSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGGGLDVTAAASFGGGEFSGKDISRNS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3491616 3493723 - Bda006585.1 Bda10g00126 14014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00126 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bda10g00126 498 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bda10g00126 498 Gene3D Classic Zinc Finger 40 108 - -
Bda10g00126 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 497 - -
Bda10g00126 498 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 497 - -
Bda10g00126 498 SMART c2h2final6 61 83 IPR013087 -
Bda10g00126 498 SMART c2h2final6 102 132 IPR013087 -
Bda10g00126 498 SMART c2h2final6 137 157 IPR013087 -
Bda10g00126 498 MobiDBLite consensus disorder prediction 212 231 - -
Bda10g00126 498 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Bda10g00126 498 Gene3D Classic Zinc Finger 115 195 - -
Bda10g00126 498 MobiDBLite consensus disorder prediction 1 44 - -
Bda10g00126 498 MobiDBLite consensus disorder prediction 193 239 - -
Bda10g00126 498 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bda10g00126 498 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00623 Bda-Chr1:33235660 Bda10g00126 Bda-Chr10:3491616 4.31E-107 dispersed
Bda03g00256 Bda-Chr3:2288639 Bda10g00126 Bda-Chr10:3491616 8.64E-165 dispersed
Bda04g00061 Bda-Chr4:1006327 Bda10g00126 Bda-Chr10:3491616 0 dispersed
Bda05g00334 Bda-Chr5:46957742 Bda10g00126 Bda-Chr10:3491616 7.36E-105 dispersed
Bda09g00187 Bda-Chr9:2692583 Bda10g00126 Bda-Chr10:3491616 2.36E-100 dispersed
Bda10g00126 Bda-Chr10:3491616 Bda12g01070 Bda-Chr12:42429856 2.94E-117 dispersed
Bda10g00123 Bda-Chr10:3211502 Bda10g00126 Bda-Chr10:3491616 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16481 PF00096 zf-C2H2 0.005 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00126 K25869 - tcc:18610967 733.406