Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00127 ATGAGATATAGGGTTTCGTATTTGATGGATGAAATCTGGGAGCGAGCTGTGGAGACAGCGTTAGACGGCCAAACTGACCGTGCTGCAGCCAGAACCCTTACCTTAGACGGTGCTGTGAAATGCGTTCAAGGTCGATTGCCTCCACCGAGCCTTTTGGAGAAGTTCCCCAACCTTCACCACCTTTCTGTTGCTAACATTGGTGTCTCGACGTTAGAACAATTTCCTCGCCTCCCTAACCTACAGAAGCTTATTCTCTCTGATAATCGGATAGCTGGAGGCCTCAAATTTCTCGTCGAAGCAGGGCTTGATTCTCTCCGAGACCTTGACCTCTCAAACAATAGGATACAATTTATTGAAGATCTTGAGCCACTTGCACAGTTGAAGCTCGTATCACTTGATCTCTATGAGTGTCCAGTTACGAGAGCTAAGGATTATCGATCTAGGATTTTTGGATTGATTAAATCGCTTAAATATTTGGATAAAATGGATTCTGAGGAGAATGAGCGGCCTGAGTCAGAGGATGAAGAGGAGGAAGAAGATGAAGATGAGGAGGATGACGATCCAGGAAGTGGAGAGGTAGACGGTGTGGATCAGCCCTCTAGAATAGTAAATGGACATAATGATGGAGTTGAAGGGGTTGTTGATGTCGATGAGGATGAAGAAAGTGACGCTGATGAGGAGGAAACTGAGACATCTAGACAAGTAAACGTAACCAATCACCAGGCCAATGGCTTTCATGTTGTGCCTGTAGAAGTGGAGGATGCTGGTGAGTACGAAGATGGTGATGATGAAGAAGATAATGAATCAGTGGAGGAAATTGATGAAGAGGGAGGTGGTGATGATGATGATGCGGTTGAGATCCATGAGTTTGATGATAGTGATGACGAAGAAGATGGGGTTGAGTATAATGAGGATGATGATGATGATGATGATGAGGATGAAGAAGTTGATAATGAAGAAGGAGACTTTGCAGAGCCAGAGAATACAGGAAGATTGGCAAGTACAGAAGGTGAAATTGATGGACATGAGCAAGGTGAAGATGGTGGAGATGAGGATGATAATGGAGAGACTGAAGAGGAGCAGGGTATTGAGGAAGATGTAGAATATGAAGATGAAGAGGATGGTGAGGAAGAGGACGAAGATTACGGTTCAGGGTATTTGTTTCAACCAGTAGTGCAGGCTGCAGAAGAAGAAGAAGAAGAAGGCGGAGGTGGTCTTGTTATGGGCCCAGTAAATGAAGATAGTGATGAGGACGAGGAGGAAGAAGTCGAAGATGAAGATGAAGTTGAGGTAATACAGCCCTCTTTCTCCCAACCTAGCAAAAGGAAGAGAGACGAAGAGGAAGACAGTGAGGAAGACAGTGAGGAAGACGAAGACGAAGATATTGTCGAACATGGCAAATCAACAAAAAAGCATCGGTAG 1422 44.8 MRYRVSYLMDEIWERAVETALDGQTDRAAARTLTLDGAVKCVQGRLPPPSLLEKFPNLHHLSVANIGVSTLEQFPRLPNLQKLILSDNRIAGGLKFLVEAGLDSLRDLDLSNNRIQFIEDLEPLAQLKLVSLDLYECPVTRAKDYRSRIFGLIKSLKYLDKMDSEENERPESEDEEEEEDEDEEDDDPGSGEVDGVDQPSRIVNGHNDGVEGVVDVDEDEESDADEEETETSRQVNVTNHQANGFHVVPVEVEDAGEYEDGDDEEDNESVEEIDEEGGGDDDDAVEIHEFDDSDDEEDGVEYNEDDDDDDDEDEEVDNEEGDFAEPENTGRLASTEGEIDGHEQGEDGGDEDDNGETEEEQGIEEDVEYEDEEDGEEEDEDYGSGYLFQPVVQAAEEEEEEGGGGLVMGPVNEDSDEDEEEEVEDEDEVEVIQPSFSQPSKRKRDEEEDSEEDSEEDEDEDIVEHGKSTKKHR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3549732 3552018 + Bda006587.1 Bda10g00127 14015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00127 473 MobiDBLite consensus disorder prediction 167 192 - -
Bda10g00127 473 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 9 319 IPR045081 -
Bda10g00127 473 Coils Coil 162 182 - -
Bda10g00127 473 MobiDBLite consensus disorder prediction 162 473 - -
Bda10g00127 473 Gene3D Ribonuclease Inhibitor 10 175 IPR032675 -
Bda10g00127 473 ProSiteProfiles Leucine-rich repeat profile. 104 125 IPR001611 GO:0005515
Bda10g00127 473 MobiDBLite consensus disorder prediction 213 228 - -
Bda10g00127 473 MobiDBLite consensus disorder prediction 254 323 - -
Bda10g00127 473 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32-RELATED PROTEIN 2 9 319 - -
Bda10g00127 473 Pfam Leucine-rich repeat 67 174 - -
Bda10g00127 473 MobiDBLite consensus disorder prediction 343 383 - -
Bda10g00127 473 MobiDBLite consensus disorder prediction 412 431 - -
Bda10g00127 473 SUPERFAMILY L domain-like 48 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00127 - - - qsu:112003480 418.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00056 Bda10g00127 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00127 Bda-Chr10:3549732 Bda04g00056 Bda-Chr4:895035 5.53E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g950 . . Bda04g00056 Bda10g00127 . . Bma09g00073 Bma15g01001 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0802 Cone12ag0748 . . . . . . Blo05g00791 Blo06g00131 . . . Bpe06g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015391 2 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00127 Bda_Chr10 FPKM 13.491193 14.19375 30.693209 30.282288 9.637745 10.701511 9.196991 8.302028 8.880816