Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00141 ATGGACCTGGCTCTCCAAACATCTGCTACTCTTCACCGAGATATTTTTCCTTCCGATTTCTTCTTCCAACCAGCTCTCGCCTCCTTCCATTCGCACTGTCAGAGCACTATTCTTCGTTTTGGCAGAAATGATTGCCGAGATACTCATTTTCGATTCCTCAAGAACACCGGAAGACGAACAGGAAGCCTTGCATTTTCCCAGAAAGTACGCTGCCCTGTTTACGTTAGCGACTTGGAGTATGTGAATGACGAGGAAGAAGAGGTCAGCTCTTCGTATTCAGAGGACGAACGACCTGTCTTATCTCTGAGCGAGAAGCCTGACAGAAACTTGGCTTTGCTTGACGACTACGAGGCAGAGGAGCTCAACTACGATGCCGGCCCCAATCACCGGAGCGGATATATCGCGTTGCTTGGGAAGCCGAATGTGGGGAAAAGCACACTCACTAATCAAATGATTGGTCAGAAGTTGTCAATTGTAACAGATAAACCTCAGACTACGAGGCATCGAGTTCTTGGTATATGTTCGGGTCCAGACTATCAGATGATACTTTATGACACACCTGGTGTAATTGAGAAGAAATTGCACAAGTTGGATTCTATGATGATGAAAAATGTTCGCAGTGCTGCCATTAATGCAGATTGTGTACTTATTCTTGTTGATGCATGTAAATTGCCCGAGAAAATTGATGAGGTCTTGGAAGAAGGTGTAGGGGACCTTCAAGAAAAACCACCTACTTTGCTGGTTTTGAATAAGAAAGATCTAATCAAACCTGGTGAAATTGCGAAGAAGCTGGAGTGGTATGAGAAATTTACTGATGTCGATGAGGTAATACCTGTAAGTGCTAAATATGGGCATGGTGTGGAGGATGTGAAGGCTTGGATTCTTTCAAAAATTCCTCTCGGGCCAGCTTATTATCCTAAGGATTTTGTTAGTGAGCATCCAGAAAGATTCTTTGTGTCTGAAATTGTCAGAGAGAAGATTTTTATGCAATATCGAAATGAAGTTCCTTATGCATGTCAGGTGAACGTGGTGAGCTATAAAACAAGACCAACTGCTAAAGATTTTATACAAGTTGAAGTTGTTGTTGAGAAAAACTCTCAGAAGATCATCCTCATTGGGAAAGAAGGAAAAGCTTTAAAACTTCTTGCAACAGCTGCTCGACTCGACATAGAAGATTTTTTACAGAAGAAAGTTTATCTCGAGGTGGAAGTTAAAGTAAAAGAAAACTGGAGACAAAATGAAGGGCTTCTAAAGGACTATGGGTATGGAGGACAAAGTCATGTAATATGA 1290 42.02 MDLALQTSATLHRDIFPSDFFFQPALASFHSHCQSTILRFGRNDCRDTHFRFLKNTGRRTGSLAFSQKVRCPVYVSDLEYVNDEEEEVSSSYSEDERPVLSLSEKPDRNLALLDDYEAEELNYDAGPNHRSGYIALLGKPNVGKSTLTNQMIGQKLSIVTDKPQTTRHRVLGICSGPDYQMILYDTPGVIEKKLHKLDSMMMKNVRSAAINADCVLILVDACKLPEKIDEVLEEGVGDLQEKPPTLLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDVKAWILSKIPLGPAYYPKDFVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEVVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVYLEVEVKVKENWRQNEGLLKDYGYGGQSHVI 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4064889 4068187 + Bda006609.2 Bda10g00141 14029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00141 429 Pfam KH domain 334 411 IPR004044 GO:0003723
Bda10g00141 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 332 IPR027417 -
Bda10g00141 429 TIGRFAM small_GTP: small GTP-binding protein domain 134 290 IPR005225 GO:0005525
Bda10g00141 429 Pfam 50S ribosome-binding GTPase 134 251 IPR006073 GO:0005525
Bda10g00141 429 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 130 300 IPR030388 GO:0005525
Bda10g00141 429 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 307 422 IPR009019 GO:0003723
Bda10g00141 429 CDD Era 129 297 IPR030388 GO:0005525
Bda10g00141 429 Gene3D - 312 425 IPR015946 -
Bda10g00141 429 Gene3D - 127 311 IPR027417 -
Bda10g00141 429 TIGRFAM era: GTP-binding protein Era 132 405 IPR005662 GO:0003723|GO:0005525
Bda10g00141 429 Hamap GTPase Era [era]. 129 422 IPR005662 GO:0003723|GO:0005525
Bda10g00141 429 PANTHER GTPASE ERA 87 423 IPR005662 GO:0003723|GO:0005525
Bda10g00141 429 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 87 423 - -
Bda10g00141 429 ProSiteProfiles Type-2 KH domain profile. 331 408 IPR004044 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00141 K03595 era, ERAL1; GTPase - csv:101204144 585.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01211 Bda-Chr9:43471226 Bda10g00141 Bda-Chr10:4064889 5.03E-25 dispersed
Bda10g00141 Bda-Chr10:4064889 Bda13g01507 Bda-Chr13:38144200 2.30E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1003 . . . Bda10g00141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0771 . . . . Chy07g01293 . . . . . Bpe10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00550 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010370 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00141 Bda_Chr10 FPKM 28.073439 30.445656 27.125294 26.618713 24.13093 24.067957 23.975004 30.621811 27.12867