Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00142 ATGTGGAGGTCCAATGTGACCTACGATTCTTATGCTTTTGCTATAGCATTGAAGGCCTGTGCAGATTTAGGTGCTTTTAATGGTGGCAGGGAGATTCATGCACAGACAATGAAGAAAGGTTTTGATGAAAACTCGTTTGTGACAAATTCTCTGTCTACAATGTATAATAAATGTGGGAAGTTGAGATATGGCTTGTATTTGTTTGAGAAGATGAGAACACCCGATGTCGTGTCTTGGACGACTATTATTACAACATATGTTCAAATGGGTATGGATGAGAGTGCAGCTGGCGCATTCATAAGAATGCGAGAACAGAATGTGACTCCCAATGAATATTCCTATGCAGCTGTGATCTCTGCATGTGCAAATCTTGCGAGACTTGAACTGGGTGAACAGTTACATGCTCATGTCTTTCAAGTTAATCTTCTTTATTATCTGTCCGTGGCAAATTCTATCATGACGATGTACTCGAAATGCGGAAAGTTGGCTTCGGCTTCTATTTTATTTGATGGAATGCTCTACCGAGATGTTATTTCATGGAGCACTATAATTGCAGCTTATTCTCAAGGAGGTTATGGCAATGAAGCTTTTAGTTATCTTTCGTGGATGAGACGAGAAGGCCCGAAACCAACCGAATTTGCTTTAGCGAGTGTGCTGAGTGTATGCGGAAGCATGGCTATTCTTGAGCAGGGGAAGCAACTTCATGCCCATGTCCAGTCTGTTGGATTAGAGAAAACAGCCATGATTGAAAGTGCTCTTATAACTATGTATTCAAAATGTGGGAGCATCAAAGAAGCTTTCAAAGTTTTTGACGCAAAGGAAAATGATGATATTATCTCTTGGACTGCCATGATAAATGGCTATGCAGAGCATGGATTCAGCCAAGAAGCGGTAGATTTGTTCGAGAAGATTCCTAAAGTTGGTCTGAGGCCAGACTCAGTGACATTCATTGGTGTTCTTGCCGCTTGTAGCCAGGCTGGGCTGGTTGACCTTGGCTTGCATTACTTCAATGTGATGAATGAGAAGTACTCAATCAATCCTTCAAAAGAACACTACGGCTGCATGATCGATCTCCTCTGCCGAGCTGGGCGATTAACTGATGCAGAGGGTATGATTCAAAGTATGCCTTTTCAACGGGATGATGTTGTATGGTCTACTCTTCTTAGGGCTTGTAGGGTCCACAGTGACGTAGAATGTGGAATACGAGCTGCTGAGGAAATTATGAAACTAAATCCAAATTGTGCAGGCACTCGCATTACTTTGGCAAACATTTATGCTGCAAAAGGGAAGTGGAGAGAAGCAGCAAGTATAAGAAAAGAAATGAAATCAAAAGGGGTGATTAAGGAGCCGGGATGGTCTTGGGTAAAAGTTAAAGAGAGGGTTTCAGCATTTGTTGCTGGGGATCGATCACATCCACAGGGCGAAGATATATATTACATGTTGGACTTACTGGCATTAAGGGTGGAAGGTGCTATTCTAGATATGGAATCTCTTATGACTGATGTTGAAGAACTGTAA 1518 41.96 MWRSNVTYDSYAFAIALKACADLGAFNGGREIHAQTMKKGFDENSFVTNSLSTMYNKCGKLRYGLYLFEKMRTPDVVSWTTIITTYVQMGMDESAAGAFIRMREQNVTPNEYSYAAVISACANLARLELGEQLHAHVFQVNLLYYLSVANSIMTMYSKCGKLASASILFDGMLYRDVISWSTIIAAYSQGGYGNEAFSYLSWMRREGPKPTEFALASVLSVCGSMAILEQGKQLHAHVQSVGLEKTAMIESALITMYSKCGSIKEAFKVFDAKENDDIISWTAMINGYAEHGFSQEAVDLFEKIPKVGLRPDSVTFIGVLAACSQAGLVDLGLHYFNVMNEKYSINPSKEHYGCMIDLLCRAGRLTDAEGMIQSMPFQRDDVVWSTLLRACRVHSDVECGIRAAEEIMKLNPNCAGTRITLANIYAAKGKWREAASIRKEMKSKGVIKEPGWSWVKVKERVSAFVAGDRSHPQGEDIYYMLDLLALRVEGAILDMESLMTDVEEL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4151015 4152532 + Bda006610.1 Bda10g00142 14030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00142 505 Gene3D Tetratricopeptide repeat domain 230 304 IPR011990 GO:0005515
Bda10g00142 505 TIGRFAM PPR: pentatricopeptide repeat domain 352 375 IPR002885 -
Bda10g00142 505 TIGRFAM PPR: pentatricopeptide repeat domain 77 111 IPR002885 -
Bda10g00142 505 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Bda10g00142 505 Pfam E motif 394 455 IPR046848 -
Bda10g00142 505 SUPERFAMILY TPR-like 259 436 IPR011990 GO:0005515
Bda10g00142 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Bda10g00142 505 PANTHER OS05G0581300 PROTEIN 3 477 - -
Bda10g00142 505 Pfam PPR repeat 251 271 IPR002885 -
Bda10g00142 505 Pfam PPR repeat 150 175 IPR002885 -
Bda10g00142 505 Pfam PPR repeat 351 375 IPR002885 -
Bda10g00142 505 Pfam PPR repeat 178 207 IPR002885 -
Bda10g00142 505 Pfam PPR repeat family 277 323 IPR002885 -
Bda10g00142 505 Pfam PPR repeat family 74 123 IPR002885 -
Bda10g00142 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Bda10g00142 505 Gene3D Tetratricopeptide repeat domain 141 229 IPR011990 GO:0005515
Bda10g00142 505 PANTHER OS07G0578800 PROTEIN-RELATED 3 477 IPR045215 GO:0003723|GO:0009451
Bda10g00142 505 Gene3D Tetratricopeptide repeat domain 1 140 IPR011990 GO:0005515
Bda10g00142 505 Gene3D Tetratricopeptide repeat domain 308 463 IPR011990 GO:0005515
Bda10g00142 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00142 - - - pper:18769162 784.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00142 Bda-Chr10:4151015 Bda13g00566 Bda-Chr13:6619024 1.22E-131 dispersed
Bda10g00142 Bda-Chr10:4151015 Bda04g00300 Bda-Chr4:46292169 9.54E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1005 . . . Bda10g00142 . . . . . . Cma03g00734 . Car03g00669 . . . . . . . . . . . . . . . . . . . . . . Lsi01g00663 . . . . . . . . . . . . Cmo03g00764 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009680 1 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00142 Bda_Chr10 FPKM 19.279011 20.089111 40.515598 40.707016 43.240707 46.06971 45.357479 29.254517 28.696604