Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00151 ATGGCGTCCTCGCCTTCTTTGCTATCGTCAGTTCTGAACCAGCCTCAGTGTGCTCTACGATTGAGGCTCAATGCAAGGCTGCGCTTCAGCTTCAGATATTTATCGTCCAAAATGGATGCTTCTGGTTTTTGCTGCTACTCGGCTGGTGCATTCCGGAGGAGTTTAGGTTTCAATTTCTCCAAAAACTTCTCGGAGTGTCAATCTGCTCTCCACAAAGATTTTCAGATTCCTAGACTGCGTAATTTAGCTGCTCAAGCTGCTATAACTGCTTCAGAATCTCCGTTAGACTCTTTACCAGATTCTGAAGTATCTTTGAGAGGTCGTATATATCACGAGACTTATGGGTGTCAAATGAATATCAATGATATGGAGATTGTCTTATCTATCATGAAGAACGCAGGATATAGCGAACTTGTTGATGCTCCTGAGAGTGCAGAAGTAATTTTCATTAATACATGTGCTATCAGGGATAATGCCGAGCAAAAGGTCTGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCACTGGAAGAGTAATGTTGCCATAGGAAGGTCCCAGTCTCTTCGCCCTCCGAAAGTAGTTGTTTTAGGATGCATGGCTGAAAGGTTAAAAGACAAGATACTGGATTCAGATAAGATGGTGGATGTGGTTTGTGGTCCTGATGCTTACAGGGACCTACCGAGATTATTGGAGGAAGTCGATTATGGTCAAAAAGGAATCAATACTCTTCTTTCACTTGAAGAAACTTATGCAGATATTAATCCTGTTCGAATTTCCAAAAATTCTGTCACGGCTTTTGTCTCCATCATGAGGGGTTGCAATAATATGTGCTCATTTTGCATTGTTCCTTTCACTAGAGGCAGAGAAAGATCTCGTCCAGTGGAATCAATTGTGAGGGAAGTGGCTGAGCTTTCCAAAGAAGGTGTGAAAGAGGTTACTCTTCTTGGTCAGAATGTTAATAGCTATAATGATGCATCTGGTGAAGAAACAGAAGTTGAACCAGGAAGTAATTGGAAGTTTAGTGAAGGCTTTTCGAGCATGAGCAAGATAAAGAAAATGGGTTTAAGATTTTCTGATCTCTTGGATCGACTTTCTCTTGAATTTCCTGAAATGAGATTCAGATTTACATCTCCACATCCCAAGGACTTTCCTGATGAACTACTCTATTTAATGCGAGACAGAAGTAATATCTGCAAATATATCCATTTACCTGCACAAAGTGGAAATAACACAGTTCTTGAAAGAATGCGTCGAGGTTATACCCGCGAAGCCTACTTGGAACTTGTGGACAAAATACGAAAAATCATTCCAGATGTGGGACTAAGCAGTGATTTCATATGTGGATTCTGTGAAGAAACGGAGGAAGAGTATGCAGAAACTTTAAGCCTTATCAAAGCTGTCGGCTACGACATGGCTTACATGTTTGCATATAGCATGAGGGAGAAAACTCACGCCCATCGAAATTATGTCGATGATGTTCCAGACGAAATAAAGCAGAGAAGGCTAACCGAACTCATCGAGGCTTTTCGGGAGAGCACAGGCCAGTGCTTTGATTCGCAGATGGGCACCTTTCAACTTGTACTAGTTGAAGGACCCAACAAGAGAGCTCCAACAACAGAGCTGATTGGCAAAACTGACAGAGGCCATAGAGTTTCCTTTGTTAATCAGCCAGTCCCCCATCGAGATGCCGATTTCGAGGGGAAAAGATGCCCAGTGGTGGGAGATTTCGTTGAAGTTCTTATATCTAAATCGACTCGAGCATCACTCTTTGGAGAGGTACAGGCCATATCTAAAATAAGTTCCTTTTACAATAACTTGGATAGAGAAGCTGTTGCCTGCTGCAGTAGTTAA 1854 42.02 MASSPSLLSSVLNQPQCALRLRLNARLRFSFRYLSSKMDASGFCCYSAGAFRRSLGFNFSKNFSECQSALHKDFQIPRLRNLAAQAAITASESPLDSLPDSEVSLRGRIYHETYGCQMNINDMEIVLSIMKNAGYSELVDAPESAEVIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVAIGRSQSLRPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELSKEGVKEVTLLGQNVNSYNDASGEETEVEPGSNWKFSEGFSSMSKIKKMGLRFSDLLDRLSLEFPEMRFRFTSPHPKDFPDELLYLMRDRSNICKYIHLPAQSGNNTVLERMRRGYTREAYLELVDKIRKIIPDVGLSSDFICGFCEETEEEYAETLSLIKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDEIKQRRLTELIEAFRESTGQCFDSQMGTFQLVLVEGPNKRAPTTELIGKTDRGHRVSFVNQPVPHRDADFEGKRCPVVGDFVEVLISKSTRASLFGEVQAISKISSFYNNLDREAVACCSS 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4458301 4460914 + Bda006622.3 Bda10g00151 14039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00151 617 CDD Radical_SAM 268 491 - -
Bda10g00151 617 SFLD CDK5RAP1 106 599 - -
Bda10g00151 617 SUPERFAMILY Radical SAM enzymes 258 512 - -
Bda10g00151 617 Pfam Uncharacterized protein family UPF0004 108 220 IPR013848 GO:0035596|GO:0051539
Bda10g00151 617 Pfam TRAM domain 520 594 IPR002792 -
Bda10g00151 617 ProSiteProfiles TRAM domain profile. 519 596 IPR002792 -
Bda10g00151 617 ProSiteProfiles Radical SAM core domain profile. 260 516 IPR007197 GO:0003824|GO:0051536
Bda10g00151 617 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 107 596 IPR006463 GO:0006400|GO:0016740|GO:0051539
Bda10g00151 617 TIGRFAM miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 109 594 - -
Bda10g00151 617 SFLD B12-binding domain containing 189 489 - -
Bda10g00151 617 Pfam Radical SAM superfamily 268 465 IPR007197 GO:0003824|GO:0051536
Bda10g00151 617 ProSitePatterns Methylthiotransferase radical SAM domain signature. 268 288 IPR020612 GO:0051539
Bda10g00151 617 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 107 236 IPR013848 GO:0035596|GO:0051539
Bda10g00151 617 SMART MiaB 264 505 IPR006638 GO:0003824|GO:0051536
Bda10g00151 617 SFLD methylthiotransferase 106 599 IPR005839 GO:0006400|GO:0016740|GO:0051539
Bda10g00151 617 Gene3D - 108 250 IPR038135 -
Bda10g00151 617 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 53 606 - -
Bda10g00151 617 Gene3D tm_1862 like domain 262 520 IPR023404 -
Bda10g00151 617 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 108 557 IPR005839 GO:0006400|GO:0016740|GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00151 - - - zju:107424556 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00151 Bda-Chr10:4458301 Bda11g00739 Bda-Chr11:7425059 3.88E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1052 . . . Bda10g00151 . . . Bma15g00978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00338 . . Bpe10g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011095 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00151 Bda_Chr10 FPKM 42.660393 45.311321 42.029934 40.644684 27.682629 28.86195 28.695528 42.061523 40.636677