Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00166 ATGGCTGGGTTTTTCTCGCTAGGCGGAGGAAGAGGATCAACAAGTAACCAGAATCAAGAACAAACAAACCCTACGAACGAAATTAATCCAGAGAGTTTGTTTTGGTACAGGAACAGCGATGACGTACCATCATACAGAAGCTTCGAGCTATGGCAAAATCAGAATCTCTACTCTTTGGGAGTGGGTCCAAGCCGGAGCGTTTTGAACACCTCCGATGCGTCTCCGGCGAGATCGTCGCTCCTGATGACGATGTCTTCCGGCGGAGGTTCGATGAGTTGCCAAGATTGCGGGAATCGGGCCAAAAAGGATTGCGTCCACATGCGATGTAGAACATGTTGTCAAAGCCGAGGGTTCGACTGTCAAACCCACCTCAAAAGCACTTGGGTTCCGGCCGCCAAGCGCCGCGAGCGGCAAGCTCAGCTGGTGGCCAACTTGCAAAATCAAGGCCAGGGAGCGAATTCGAAGCGGTTCAGAGAGAATCCATCGTCTTCTTCCTCGCTAGCCTGCACTCGTATACCCACTAACGCCTCTGGTAAATCATCATCGGTAGTAAATTTGCAAGGGATTGCTTGGTTAGCAGAGAGGGGAGCTTTTCCGGCGGAAGTGGCATCGTCGGCGGTTTTTCGGTGCGTTCGAGTGAGCTCAATGGAAGATCCGGACGAGCAGTACGCGTATCAGACAGCTGTGAACATCGGTGGCCATGTTTTCAATGGCATTCTCTACGACCAAGGGCCGGAGATCGTAAACTACATTCCCAGAGAGAGCTCCTCCGGTGGAAGTGGACTCCAACCGCTAAACTTCATCCCCGCGGGAGCCACAACCACCGCCTCTGCAACCAGTACGAGTGGAGTTGCGGGTGCTTTGTTGGATCCTACTGTATACCCTACTCATCTCAGTACTTACATTTCTGGTACGCAATTCTTCCTTCCCCCAAGACCTTGA 942 52.23 MAGFFSLGGGRGSTSNQNQEQTNPTNEINPESLFWYRNSDDVPSYRSFELWQNQNLYSLGVGPSRSVLNTSDASPARSSLLMTMSSGGGSMSCQDCGNRAKKDCVHMRCRTCCQSRGFDCQTHLKSTWVPAAKRRERQAQLVANLQNQGQGANSKRFRENPSSSSSLACTRIPTNASGKSSSVVNLQGIAWLAERGAFPAEVASSAVFRCVRVSSMEDPDEQYAYQTAVNIGGHVFNGILYDQGPEIVNYIPRESSSGGSGLQPLNFIPAGATTTASATSTSGVAGALLDPTVYPTHLSTYISGTQFFLPPRP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4910528 4911811 - Bda006649.1 Bda10g00166 14054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00166 313 MobiDBLite consensus disorder prediction 1 30 - -
Bda10g00166 313 Pfam Domain of unknown function (DUF702) 90 246 - -
Bda10g00166 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 309 IPR007818 GO:0003700|GO:0006355
Bda10g00166 313 MobiDBLite consensus disorder prediction 145 168 - -
Bda10g00166 313 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 197 245 IPR006511 -
Bda10g00166 313 MobiDBLite consensus disorder prediction 9 30 - -
Bda10g00166 313 PANTHER PROTEIN SHORT INTERNODES 1 309 - -
Bda10g00166 313 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 92 134 IPR006510 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00166 - - - jre:108993505 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00510 Bda-Chr1:32082199 Bda10g00166 Bda-Chr10:4910528 2.08E-86 dispersed
Bda01g01519 Bda-Chr1:51050589 Bda10g00166 Bda-Chr10:4910528 4.12E-84 dispersed
Bda08g01246 Bda-Chr8:50963196 Bda10g00166 Bda-Chr10:4910528 5.97E-80 dispersed
Bda09g01331 Bda-Chr9:45050922 Bda10g00166 Bda-Chr10:4910528 6.75E-48 dispersed
Bda10g00166 Bda-Chr10:4910528 Bda14g00993 Bda-Chr14:8140463 4.33E-80 dispersed
Bda10g00166 Bda-Chr10:4910528 Bda03g00274 Bda-Chr3:2407882 3.21E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1063 Blo04g00900 . . Bda10g00166 . . Bma09g00096 Bma15g00973 . Cmo16g00699 Cma03g00708 Cma07g00452 Car03g00648 Car07g00399 Sed14g1169 Cpe19g00837 . Bhi03g00899 Tan03g2042 Cmetu04g2849 . Hepe04g1564 . . Cla01g01952 Cam01g2041 Cec04g1699 Cco04g1764 Clacu01g2063 Cmu01g1940 Cre04g1614 Cone8ag0832 Cone12ag0735 Cone6ag1659 Cone9ag1584 Lsi01g00631 . Chy07g01266 Cme08g00899 Blo05g00815 Blo06g00331 . . Bpe10g00138 Bpe06g00032 Bma03g00977 . . Cmo03g00734 Cmo07g00450 Cma16g00640 . . . . Cpe14g00546 . . . . . . . Cla07g00839 Cam07g0908 Cec07g0963 Cco07g0951 Clacu07g0884 Cmu07g0883 Cre07g1245 Lsi07g00230 Csa06g03294 Chy02g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001605 2 3 3 3 2 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 3 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16482 PF05142 DUF702 8.40E-62 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00166 Bda_Chr10 FPKM 5.291156 5.933062 5.119638 4.01076 15.090189 13.279564 13.780963 9.768499 6.114833