Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00169 ATGGGGCGTGGGAAAATCGAAATCAAGAGGATCGAAAACGCTACGAACAAGCAGGTTACCTACTCGAAAAGAAGAAATGGTCTTTTTAAGAAAGCCAAAGAACTTTCTGTTCTTTGCGATGCAAAGGTCTCCATTATCATGTTCTCTATTACTGGCAAGTTTCATGAAACGAAGAAGATCTATGATCAGTATCAGCGAACTTTGGGGATTGATCTGTGGAGCTCGCACTATAAGAGAATGGAAGAAAACTTGAGGAAACTGAAGGAAATCAACTACAAACTGAGGACAGAGATTAGGCAAAGAATTGGCAAAGATTTACATGATCTAGACTTCAAGCAACTGCATAGTCTCGAGCAGAAGATATCTTCTCCATTGGCAGCCATACGCGCCAGAAAGGTTTAA 402 40.8 MGRGKIEIKRIENATNKQVTYSKRRNGLFKKAKELSVLCDAKVSIIMFSITGKFHETKKIYDQYQRTLGIDLWSSHYKRMEENLRKLKEINYKLRTEIRQRIGKDLHDLDFKQLHSLEQKISSPLAAIRARKV 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5046312 5047130 + Bda006654.1 Bda10g00169 14057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00169 133 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Bda10g00169 133 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 ProSiteProfiles K-box domain profile. 77 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda10g00169 133 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bda10g00169 133 Coils Coil 70 97 - -
Bda10g00169 133 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bda10g00169 133 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 Pfam K-box region 74 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda10g00169 133 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda10g00169 133 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 132 - -
Bda10g00169 133 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00169 K09264 K09264; MADS-box transcription factor, plant - vvi:100233014 204.142
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00032 Bda10g00169 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00169 Bda-Chr10:5046312 Bda08g00226 Bda-Chr8:2229689 4.70E-31 dispersed
Bda15g00924 Bda-Chr15:16045111 Bda10g00169 Bda-Chr10:5046312 1.44E-24 dispersed
Bda10g00169 Bda-Chr10:5046312 Bda04g00032 Bda-Chr4:528368 1.87E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1067 . . Bda04g00032 Bda10g00169 . . Bma09g00098 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0833 Cone12ag0733 . . . . . . Blo05g00715 . . . Bpe10g00142 Bpe06g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003277 3 1 2 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 1 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16483 PF01486 K-box 2.80E-12 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00169 Bda_Chr10 FPKM 13.414089 13.733607 19.139296 18.516773 15.988564 16.350943 14.263451 24.392752 23.682899