Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00172 ATGCGGACACTTTGCGACGCCTGTGAAAGCGCTGCCGCCGCTGTTTTTTGCGCCGCCGATGAAGCCGCCCTCTGCCGATCCTGCGACGAGAAGGTTCATATGTGCAACAAACTCGCAAGCCGACATGTTCGAGTTGGCCTAGCAAAGCCCTGTGATGTCAATCGGTGTGATATATGCGAAAATGCACCTGCTTTCTTTTACTGCGAGATTGATGGGAGTTCGCTGTGTTTGCAATGCGATATGATTGTTCATGTTGGAGGTAAAAGAACACACAAAAGATACCTTCTACTAAGGCAGAGAGTTGAGTTTCCGGGCGATAAAGCTATTAATATCAATGATTCTTCTCCACAACCAATGGATCCAGGCGAAACCAAGAGACAGAGTCAGCAAAGTAAGGGGACAGTGGGGGACAATCGAGAAAATCATATGATATCTCCACCAAATGTCGATGGACATTCGAACAATGGAGCTAAAATGATTGATCTGAATATGAAGCCTCATAGAATTCATGGCCAAGCTTCAAATAATCAGGTTAGACTGTTTTGTTTTTGCCACTTGCTCTCAATCAACTTTACTAATTTCCATAAAATGGAAACTTCAAATGACTCTTTGATTGGAATCAAATTGTTTTTCTTTTATTGGTCGGTGATCTGTTTCTGGCTTATCAAGATCTTTCTTAATTAG 684 42.69 MRTLCDACESAAAAVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAKPCDVNRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKAININDSSPQPMDPGETKRQSQQSKGTVGDNRENHMISPPNVDGHSNNGAKMIDLNMKPHRIHGQASNNQVRLFCFCHLLSINFTNFHKMETSNDSLIGIKLFFFYWSVICFWLIKIFLN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5344462 5346094 + Bda006659.1 Bda10g00172 14060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00172 227 CDD Bbox1_BBX-like 4 47 - -
Bda10g00172 227 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bda10g00172 227 MobiDBLite consensus disorder prediction 110 138 - -
Bda10g00172 227 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda10g00172 227 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 179 - -
Bda10g00172 227 CDD Bbox1_BBX-like 56 96 - -
Bda10g00172 227 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Bda10g00172 227 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Bda10g00172 227 MobiDBLite consensus disorder prediction 107 150 - -
Bda10g00172 227 SMART bboxneu5 1 47 IPR000315 GO:0008270
Bda10g00172 227 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bda10g00172 227 Gene3D Classic Zinc Finger 2 96 - -
Bda10g00172 227 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00172 - - - tcc:18610806 290.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda10g00172 Bda11g01843 CCT
Bda10g00172 Bda11g01843 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00172 Bda-Chr10:5344462 Bda14g00989 Bda-Chr14:8030086 1.98E-78 dispersed
Bda10g00172 Bda-Chr10:5344462 Bda11g01843 Bda-Chr11:53635914 5.29E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00661 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 50.2 1.3e-72 270.4
Bda14g00574 CCT,ECH 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 6.6e-52 201.4
Bda06g00954 BCT,CCT,ECH 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 54.4 8.7e-52 201.1
Bda08g00955 BCT,CCT,ECH 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 2.5e-51 199.5
Bda10g00172 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 1.6e-52 202.6
Bda14g00989 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 59.1 1.1e-50 196.4
Bda11g01843 CCT,ECH 1 182 C2C2-CO-like Transcription Factor Family AT2G21320 57.7 1.9e-50 195.7
Bda10g00172 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.8e-54 209.1
Bda11g01843 CCT,ECH 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 59.4 1.1e-51 199.9
Bda14g00989 . 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 58.6 2.9e-49 191.8
Bda06g00954 BCT,CCT,ECH 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 2.8e-55 212.2
Bda08g00955 BCT,CCT,ECH 1 189 C2C2-CO-like Transcription Factor Family AT4G39070 56.7 4.7e-55 211.5
Bda14g00574 CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 5.7e-53 204.5
Bda08g01236 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.2e-47 186.8
Bda01g00506 CCT,ECH 1 112 C2C2-CO-like Transcription Factor Family AT4G39070 64.3 3.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16484 PF00643 zf-B_box 2.00E-05 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00172 Bda_Chr10 FPKM 43.385494 47.482548 0.0 0.0 1.069383 1.319384 0.902765 0.035785 0.0