Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00180 GTTGTGATGGGTGAAGGGAGAGAAGGAGATTGGGAGTGCAGTGGCTGCAAGAACAGAAACTACGCTTTCAGATCGTTCTGTAACAGATGTAAGCAGCCTCGCCTTCTGGTTGATAACAAAACCCCAGCTGACTCTAAATGGCTCCCTCGAATCGGAGACTGGATCTGCACAGGTTGCACTAACAACAATTATGCATCGCGAGAAAAGTGCAAAAAGTGCGGCCAACCGAAGGAGATTGCTGCAATTCCAGCCATCGCATTGCATGGAGCTGCTTTTCCTGCCTTTTCACACTATTCTGCTAGGAGTCCCAGCCTCTTAGATCTGAAGATGCATGTCCGGCCAAATGGTGATGGTGGTGGTCCCCAGCAGCTGCTTCCTCTGAGCTCTGCCTGGTCTTTAGGAGGCCCTGATAAGTATGGAGTCATCCCTCCTTCAGCTTGGCCTTTAGGTGGTAGTTCTCCTCTTCCATATCCAAATCCTCTGAATCAGCTTCTTGCTATTCCTAAAAGTTGGCGGAATGGTGATTGGATTTGCAAGTGCGGGTTCCATAATTATTCTTCACGGGCGCAGTGCAAAAAGTGCAACACGTTACCTCCAGCGCTTGGAACAAAAAGGTTAGCTTCTGAGGAGCTCATCCATGACTTAGATAAGAAGAGACCAAATGTTGGACAGCATTCTTACCCAGGTTTTGAGCATATGGCGAGACCGTTTGGAGATCCCAATATGGGATTATATGCCTCCTTTTCCGGTATAGGCGCTCCTTTAGCCCCAAGTTTTCAATTGCCTTTGCAGTTTACACAGCAAGCCACTGCATCTTCACTCCTTGGAAAAGGAGCAAAGCAGTGGCGTGATGGGGATTGGATGTGCATGAACTGCAACAATCATAATTATGCATCACGAGCACAGTGCAACAGGTGTAAAACTCAAAGAGATGCACGTGCTCAGCCAGTGGATGCTATGTAG 963 48.08 VVMGEGREGDWECSGCKNRNYAFRSFCNRCKQPRLLVDNKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEIAAIPAIALHGAAFPAFSHYSARSPSLLDLKMHVRPNGDGGGPQQLLPLSSAWSLGGPDKYGVIPPSAWPLGGSSPLPYPNPLNQLLAIPKSWRNGDWICKCGFHNYSSRAQCKKCNTLPPALGTKRLASEELIHDLDKKRPNVGQHSYPGFEHMARPFGDPNMGLYASFSGIGAPLAPSFQLPLQFTQQATASSLLGKGAKQWRDGDWMCMNCNNHNYASRAQCNRCKTQRDARAQPVDAM 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5837301 5840477 + Bda006671.1 Bda10g00180 14068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00180 320 ProSitePatterns Zinc finger RanBP2-type signature. 11 30 IPR001876 -
Bda10g00180 320 Pfam Zn-finger in Ran binding protein and others 50 78 IPR001876 -
Bda10g00180 320 Pfam Zn-finger in Ran binding protein and others 7 34 IPR001876 -
Bda10g00180 320 Pfam Zn-finger in Ran binding protein and others 283 310 IPR001876 -
Bda10g00180 320 SUPERFAMILY Ran binding protein zinc finger-like 7 35 IPR036443 -
Bda10g00180 320 SUPERFAMILY Ran binding protein zinc finger-like 44 78 IPR036443 -
Bda10g00180 320 PANTHER OS04G0110600 PROTEIN 5 140 - -
Bda10g00180 320 PANTHER OS04G0110600 PROTEIN 169 226 - -
Bda10g00180 320 Gene3D - 169 200 - -
Bda10g00180 320 Gene3D - 44 79 - -
Bda10g00180 320 Gene3D - 278 313 - -
Bda10g00180 320 Gene3D - 5 35 - -
Bda10g00180 320 ProSiteProfiles Zinc finger RanBP2 type profile. 7 36 IPR001876 -
Bda10g00180 320 ProSiteProfiles Zinc finger RanBP2 type profile. 50 79 IPR001876 -
Bda10g00180 320 SUPERFAMILY Ran binding protein zinc finger-like 277 312 IPR036443 -
Bda10g00180 320 SUPERFAMILY Ran binding protein zinc finger-like 170 197 IPR036443 -
Bda10g00180 320 ProSiteProfiles Zinc finger RanBP2 type profile. 283 312 IPR001876 -
Bda10g00180 320 ProSitePatterns Zinc finger RanBP2-type signature. 54 73 IPR001876 -
Bda10g00180 320 PANTHER OS04G0110600 PROTEIN 268 319 - -
Bda10g00180 320 PANTHER ZINC FINGER PROTEIN 268 319 - -
Bda10g00180 320 SMART zf_4 174 197 IPR001876 -
Bda10g00180 320 SMART zf_4 9 33 IPR001876 -
Bda10g00180 320 SMART zf_4 52 76 IPR001876 -
Bda10g00180 320 SMART zf_4 285 309 IPR001876 -
Bda10g00180 320 ProSitePatterns Zinc finger RanBP2-type signature. 287 306 IPR001876 -
Bda10g00180 320 PANTHER ZINC FINGER PROTEIN 5 140 - -
Bda10g00180 320 PANTHER ZINC FINGER PROTEIN 169 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00180 - - - jre:108992034 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01691 Bda-Chr7:31333252 Bda10g00180 Bda-Chr10:5837301 9.53E-08 dispersed
Bda09g01053 Bda-Chr9:40750156 Bda10g00180 Bda-Chr10:5837301 6.64E-06 dispersed
Bda10g00180 Bda-Chr10:5837301 Bda10g00946 Bda-Chr10:43771317 7.32E-07 dispersed
Bda10g00180 Bda-Chr10:5837301 Bda12g00648 Bda-Chr12:31318757 8.77E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1104 . . . Bda10g00180 . . . Bma15g00948 . . . Cma07g00432 . Car07g00381 Sed14g1183 Cpe19g00853 . Bhi03g00876 Tan03g2064 Cmetu04g2634 . Hepe04g1584 . . Cla01g01972 Cam01g2064 Cec04g1723 Cco04g1789 Clacu01g2085 Cmu01g1962 Cre04g1636 Cone8ag0845 . . . Lsi01g00609 . . Cme08g00918 . . . . . . . . . . Cmo07g00431 . . . . . . . . . . . . . . . . . . . . . Csa06g03316 Chy02g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010373 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00180 Bda_Chr10 FPKM 0.391087 0.0 2.381057 2.861047 3.814029 4.8023 4.378255 0.097419 0.21888