Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00200 CGGCCCCAGATGAGTCTCAATGGCCTCCCTTCTGCCCTTTCCTCTGACGAAGCCTCGCCGGAGTGGCTTAGCAAAGCAGACAATGCGTGGCAACTTACAGCAGCAACCATGGTCGGCCTGCAAAGCGTACCGGGGCTTGTCATTCTGTACGGAAGTATGGTGAAGAAAAAATGGGCCGTCAACTCCTCTTTCATGGCGCTTTACGCCTTCGCTGCAGTTCTCGTCTGCTGGGTTCTTTGGGCGCACAACATGGCCTTTGGGGACAAACTGATCCTCATTGTTGGTAAGCCCAATGTCGCCTTCTCAGAAAACCGTCTTCTCCGACAAACCCAGCTGAAGTTTGCGAATTACAAGGTGCCAATGGCTGACTATGTGTTTTTCCAATTTGCTTTCGCCGCCATTACCGTCATATTGCTAGGCGGCTCGTTGTTGGGGAGGATGAAGTTTCTTGCGTGGATGATGTTTGTCCCTCTTTGGCTCACCTTTTGTTATACAGTCGGCGCCTTCAGCATCTGGGGAAATGGTTTTGGAGAGAAAATCATCATTGATTATGCGGGCGGATATGTCATTCATCTCTCTTCAGGAGTTGCAGGTTTCACCGCTGCTTACTGGGTGGGTCCGAGAAGCGTAGACGACAGGCAGCACTTCCCACCAAACAACATAGTTCATGTGCTTGGAGGCGCCGGATTCTTATGGCTGGGTTGGACTGGTTTCAATGGAGGATCCCCGTTTGCTGCGAGTACCGTCACATCTTTAGCCGTTTGTAACACACATCTCTGCACTGCTACCAGTATCTTGATATGGATGTCTTTGGACATGATCGTCTACAAAAAAATCTCTGTGATTGGAGCGGTTCAAGGGATGATCACCGGCCTCGTTTGCATCACACCCGGCGCTGGACTGGTGGATCCTGTTGCGGCGGCGGTAATGGGGGCTTTATCAGGTTCGGTGCCGTGGTACACGATGATGATTTTACACCGAAGATTGGACTTCTTCCAGAGCGTAGACGACACTTTAGGGGTTTTCCACACTCATGCAGTGGCCGGAGCTTTGGGAGGACTACTCACCGGCTGCTTGGCCAGACCTAATCTTCTCCATCTGATGTACGGCGATAACGAATACGGTCCAGGAATCGTGTACGCCATGTTTGACGGACAATTCAGAAAAGGTTTGAAACAGTTTGGGTTCCAGGTGAGCGGATTATTGTTCATCGCGATCTGGAACGTCATTGGAACGAGCTTGATCTGTATTTTGATAAGACGGGTCGTGAGTCTGAGAATGGAGGAAGAAGAGCTCAAGATAGGAGACGACGCTGTTCATGGAGAAGAAGCTTACGCTGTGTGGGGAGACGGGGACAGAATATCATCCACCATTCGTCTTCGCGCTTCACGAGTACCTTCTGCAAGCCGCGGAGAT 1416 50.99 RPQMSLNGLPSALSSDEASPEWLSKADNAWQLTAATMVGLQSVPGLVILYGSMVKKKWAVNSSFMALYAFAAVLVCWVLWAHNMAFGDKLILIVGKPNVAFSENRLLRQTQLKFANYKVPMADYVFFQFAFAAITVILLGGSLLGRMKFLAWMMFVPLWLTFCYTVGAFSIWGNGFGEKIIIDYAGGYVIHLSSGVAGFTAAYWVGPRSVDDRQHFPPNNIVHVLGGAGFLWLGWTGFNGGSPFAASTVTSLAVCNTHLCTATSILIWMSLDMIVYKKISVIGAVQGMITGLVCITPGAGLVDPVAAAVMGALSGSVPWYTMMILHRRLDFFQSVDDTLGVFHTHAVAGALGGLLTGCLARPNLLHLMYGDNEYGPGIVYAMFDGQFRKGLKQFGFQVSGLLFIAIWNVIGTSLICILIRRVVSLRMEEEELKIGDDAVHGEEAYAVWGDGDRISSTIRLRASRVPSASRGD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6968556 6970186 - Bda033110 Bda10g00200 14088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00200 472 TIGRFAM amt: ammonium transporter 27 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda10g00200 472 SUPERFAMILY Ammonium transporter 22 426 - -
Bda10g00200 472 Gene3D Ammonium transporter AmtB like domains 10 463 IPR029020 -
Bda10g00200 472 PANTHER AMMONIUM TRANSPORTER 7 468 - -
Bda10g00200 472 PANTHER AMMONIUM TRANSPORTER MEP2 7 468 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda10g00200 472 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005887
Bda10g00200 472 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005887
Bda10g00200 472 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005887
Bda10g00200 472 Pfam Ammonium Transporter Family 29 445 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bda10g00200 472 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00200 Bda-Chr10:6968556 Bda13g00219 Bda-Chr13:2791677 0 dispersed
Bda10g00200 Bda-Chr10:6968556 Bda11g00498 Bda-Chr11:5304751 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00200 K03320 - zju:107407267 696.812