Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00208 ATGCAGGATCTGTGGAACGGTGCACAGCTGGGTCTGAGACCCACCAAATCGGCTCCTTCTTCTCCCGCCAAGCCTCTGGGCTTGTCTAGAACTCGGTCAGAGGCTTTTCATGTAACTCATAAAGTCCCAGTCGGAGATTCACCGTATTTGGTCGACAAGGATCCAGACAAAGCGATTCCACTTTTCTGGGCAGCCATTAATGCAGGTGATAGAGTAGATAGTGCACTAAAAGACATGGCTATCGTTATGAAGCAGCAAAACAGGGCTGAAGAAGCCATCGAAGCGATTAAATCGCTGAGACATCGTTGCTCCGACGTAGCCCAGGAGTCGCTTGACAATATTCTTCTGGATCTTTACAAGGCATTTTCTAGGTGCGGCAGATTGGAAGACCAAATAGCTCTTCTGAAGCACAAATTACTCCTAATACAACAAGGTTTGGCTTTCAACGGGAAGCGTACTAAGACAGCCAGATCACAGGGGAAGAAATTCCAGGTGTCTGTTGAACAAGAAGCCACTCGACTGCTTATTGGATTTAAACATTTTGTCGGAAACTTTCCGCTGATTTTAAGAACTAAAAACTCTTTTTCTCAGGGAAACTTGGGGTGGGCATTGATGCAGCAGAATAACTACATCGAGGCGGAAGACGCTTATCGAAGAGCACTTTCGATTGCGCCTGACAATAACAAAATGTGCAATCTTGGCATATGTTTGATGAAACAAGGAAGAATATCAGAGGCTAAAGAGAATCTCCGACGAGTGAGACCAGCCGTTTCCGACGGTCCAAGAGGCACGGACTCTCATCTTAAAGCCTACGAAAGGGCGCAGCAGATGCTCAAGGACCTTGAATCGGAGATGATGAACAGGGGCGGCGACAGGCTGGAGCAGAGCCGGCTCTTCGACGCCTTTCTAGGTTCATCTTCAATTTGGCAGCCGCAGCCTTGCAAGGACCACACAGTCAAAACAACGCAGCCTGAATTTGCCGACGAGAATATAGACACAAACAGATCCGTAAATCAGAACACAATTTTGCAGCAGCCCAGATTAACGAAACCAATTCCTCACAGTGGAGTTTCATTGAACGTTTCGGCGCAGCCGTTCTACTCGTCGATGGGAAACAGCATCCCGTTGGCCGAGGGGCTTAAGAGAACAAGGTCTGGGAATGCAGCCATGGTAGGAGGGGAAATAATGTTGAGGCCTGAAACGAAGACAAGAAGGCTAAGTTTTGAAGAAAATGGAGATGGTAAAGCATTGGAGATGCTGTTACCTGGGGATGAAGACTTCCAGGAGGCAATCATGGCCGCAGTTTTGGGACCACCACCGAATGATGAAACTGGGAAGGCAGTGAATAATAATAATAATAATAATAGTAGGAAGATAGAGAAGAGGCTTAAGGTGTTTCAAGACATCACTCTTTCATTGAGTCCTAGGGCATAG 1434 47.0 MQDLWNGAQLGLRPTKSAPSSPAKPLGLSRTRSEAFHVTHKVPVGDSPYLVDKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRHRCSDVAQESLDNILLDLYKAFSRCGRLEDQIALLKHKLLLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLIGFKHFVGNFPLILRTKNSFSQGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRISEAKENLRRVRPAVSDGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQSRLFDAFLGSSSIWQPQPCKDHTVKTTQPEFADENIDTNRSVNQNTILQQPRLTKPIPHSGVSLNVSAQPFYSSMGNSIPLAEGLKRTRSGNAAMVGGEIMLRPETKTRRLSFEENGDGKALEMLLPGDEDFQEAIMAAVLGPPPNDETGKAVNNNNNNNSRKIEKRLKVFQDITLSLSPRA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7224728 7226344 - Bda006718.2 Bda10g00208 14096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00208 477 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
Bda10g00208 477 Coils Coil 264 284 - -
Bda10g00208 477 Coils Coil 82 109 - -
Bda10g00208 477 MobiDBLite consensus disorder prediction 439 459 - -
Bda10g00208 477 Gene3D Tetratricopeptide repeat domain 49 289 IPR011990 GO:0005515
Bda10g00208 477 SUPERFAMILY TPR-like 50 301 IPR011990 GO:0005515
Bda10g00208 477 MobiDBLite consensus disorder prediction 9 30 - -
Bda10g00208 477 PANTHER PROTEIN POLLENLESS 3-LIKE 2 10 175 IPR044961 -
Bda10g00208 477 PANTHER PROTEIN POLLENLESS 3-LIKE 2 198 474 IPR044961 -
Bda10g00208 477 Pfam Tetratricopeptide repeat 198 227 IPR001440 GO:0005515
Bda10g00208 477 PANTHER PROTEIN POLLENLESS 3-LIKE 2 10 175 - -
Bda10g00208 477 PANTHER PROTEIN POLLENLESS 3-LIKE 2 198 474 - -
Bda10g00208 477 SMART tpr_5 194 227 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00208 - - - qsu:112035432 629.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00191 Bda-Chr10:6714464 Bda10g00208 Bda-Chr10:7224728 0 dispersed
Bda10g00208 Bda-Chr10:7224728 Bda11g01902 Bda-Chr11:54238581 1.47E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1144 . . . Bda10g00208 . . . . . . Cma03g00674 . Car03g00619 . . Cpe19g00869 . . . . . . . . . . . . . . . . . . . Lsi01g00585 . . . . Blo06g00290 . . . . . . . Cmo03g00698 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00208 Bda_Chr10 FPKM 11.998142 14.663337 17.230618 18.393333 9.839831 5.791793 10.413809 5.142329 4.586007