Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00275 ATGGAGAACCAGGGATCTGCAGTTGGTAGAGCACGAAGGGATGCTGCTGCACGTGCTATGCAGGGCTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTGTTATGAAGGATAAGAATTCTCTCTCTGTGCAAAAGCGTGAAAAACAGCTCAAAAACATTGGTGTATTCAAACGTAAGAAATCACCGTATGTGGAGCACGATGTTAAAGCTGTGCGTAGTAAAACATCAAAACCTCAAACGGATACAACAGTAATAGATATTGGACTTCCAGCTGAATGGGTGAAGATCAATGTACAGAAAACTAAAGATTGTTATGAGGTCTATGCTTTAGTTCCAGGACTTCTGCGAGAGGAGGTCCGTGTTCAATCAGATCCAGCAGGAAGACTTGTTATTAGTGGTGAACCTGAGCATCCTGACAATCCATGGGGTGTCACACCCTTCAAGAAGGTGGTTAGCCTACCTTCAAGGATCGATCCGCATCAGACATCTGCAGTTGTGACCTTGCACGGACAGTTGTTTGTTCGAGTCCCATTTGAGCAGTCAGAGTGA 561 45.45 MENQGSAVGRARRDAAARAMQGWHSQRLLGNGEVSDPVMKDKNSLSVQKREKQLKNIGVFKRKKSPYVEHDVKAVRSKTSKPQTDTTVIDIGLPAEWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30342155 30345148 + Bda007006.1 Bda10g00275 14163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00275 186 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 3 185 - -
Bda10g00275 186 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 86 186 IPR002068 -
Bda10g00275 186 MobiDBLite consensus disorder prediction 1 47 - -
Bda10g00275 186 Gene3D - 73 186 IPR008978 -
Bda10g00275 186 CDD ACD_sHsps-like 101 181 - -
Bda10g00275 186 Pfam Hsp20/alpha crystallin family 103 185 IPR002068 -
Bda10g00275 186 SUPERFAMILY HSP20-like chaperones 94 182 IPR008978 -
Bda10g00275 186 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 3 185 IPR045147 GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00275 - - - qsu:112032164 322.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01577 Bda-Chr1:51590827 Bda10g00275 Bda-Chr10:30342155 1.56E-73 dispersed
Bda10g00275 Bda-Chr10:30342155 Bda04g00200 Bda-Chr4:7331564 1.67E-113 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00275 Bda_Chr10 FPKM 2.261745 3.177728 1.779573 2.435065 3.835681 2.507259 1.616137 0.678009 1.844995