Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00275 ATGGAGAACCAGGGATCTGCAGTTGGTAGAGCACGAAGGGATGCTGCTGCACGTGCTATGCAGGGCTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTGTTATGAAGGATAAGAATTCTCTCTCTGTGCAAAAGCGTGAAAAACAGCTCAAAAACATTGGTGTATTCAAACGTAAGAAATCACCGTATGTGGAGCACGATGTTAAAGCTGTGCGTAGTAAAACATCAAAACCTCAAACGGATACAACAGTAATAGATATTGGACTTCCAGCTGAATGGGTGAAGATCAATGTACAGAAAACTAAAGATTGTTATGAGGTCTATGCTTTAGTTCCAGGACTTCTGCGAGAGGAGGTCCGTGTTCAATCAGATCCAGCAGGAAGACTTGTTATTAGTGGTGAACCTGAGCATCCTGACAATCCATGGGGTGTCACACCCTTCAAGAAGGTGGTTAGCCTACCTTCAAGGATCGATCCGCATCAGACATCTGCAGTTGTGACCTTGCACGGACAGTTGTTTGTTCGAGTCCCATTTGAGCAGTCAGAGTGA 561 45.45 MENQGSAVGRARRDAAARAMQGWHSQRLLGNGEVSDPVMKDKNSLSVQKREKQLKNIGVFKRKKSPYVEHDVKAVRSKTSKPQTDTTVIDIGLPAEWVKINVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30342155 30345148 + Bda007006.1 Bda10g00275 14163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00275 186 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 3 185 - -
Bda10g00275 186 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 86 186 IPR002068 -
Bda10g00275 186 MobiDBLite consensus disorder prediction 1 47 - -
Bda10g00275 186 Gene3D - 73 186 IPR008978 -
Bda10g00275 186 CDD ACD_sHsps-like 101 181 - -
Bda10g00275 186 Pfam Hsp20/alpha crystallin family 103 185 IPR002068 -
Bda10g00275 186 SUPERFAMILY HSP20-like chaperones 94 182 IPR008978 -
Bda10g00275 186 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 3 185 IPR045147 GO:0006357
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01577 Bda-Chr1:51590827 Bda10g00275 Bda-Chr10:30342155 1.56E-73 dispersed
Bda10g00275 Bda-Chr10:30342155 Bda04g00200 Bda-Chr4:7331564 1.67E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00275 - - qsu:112032164 322.783