Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda10g00312 | ATGACAGGAATTTCCATCTTGATGGCAATTGGGTTCGGAGAATCAACTAAGGCTCCACCTCAGAACCCTTTTAGTTCAAGCGATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTTGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATTCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCATGCCGACCCTCGTTCGAAGTCATACCCTAGTTTCGATATTCCGAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCGCAATCAAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAATGGCATCCGCCAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTAATTCCTTCTTTATTTAACGTTCAGTTTCATGGATATCCTGATGCCACTGTCTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCACGGTTTTCCCCAACCTCCAAACCGGGGGCAGCAGGCTGATAATATACTGAAGAATCTCCTCTTGCTGATAGGGGTATTTGTCATTCTTGCTCTTCTATGTTGTTAG | 708 | 45.34 | MTGISILMAIGFGESTKAPPQNPFSSSDGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTHADPRSKSYPSFDIPNRPSGQRPDTAPPPQSNHFTNHGFGFMGGFAPMASARFGNFTLATAFGGLIPSLFNVQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQQADNILKNLLLLIGVFVILALLCC | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32609875 | 32610582 | + | Bda007085.1 | Bda10g00312 | 14200 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda10g00312 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 102 | IPR013083 | - | |
Bda10g00312 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 10 | 234 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bda10g00312 | 235 | SUPERFAMILY | RING/U-box | 37 | 94 | - | - | |
Bda10g00312 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 41 | 82 | IPR001841 | - | |
Bda10g00312 | 235 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 10 | 234 | - | - | |
Bda10g00312 | 235 | MobiDBLite | consensus disorder prediction | 96 | 131 | - | - | |
Bda10g00312 | 235 | SMART | ring_2 | 41 | 81 | IPR001841 | - | |
Bda10g00312 | 235 | CDD | RING-HC_AtRMA_like | 39 | 83 | - | - | |
Bda10g00312 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 41 | 81 | IPR018957 | GO:0046872 | |
Bda10g00312 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 56 | 65 | IPR017907 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00250 | Bda-Chr3:2251464 | Bda10g00312 | Bda-Chr10:32609875 | 3.74E-71 | dispersed | |
Bda10g00312 | Bda-Chr10:32609875 | Bda10g00322 | Bda-Chr10:33200560 | 8.99E-172 | dispersed | |
Bda10g00312 | Bda-Chr10:32609875 | Bda01g00547 | Bda-Chr1:32387548 | 3.37E-101 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda10g00312 | K10666 | - | mnt:21392517 | 400.593 |