Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00312 ATGACAGGAATTTCCATCTTGATGGCAATTGGGTTCGGAGAATCAACTAAGGCTCCACCTCAGAACCCTTTTAGTTCAAGCGATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTTGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATTCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCATGCCGACCCTCGTTCGAAGTCATACCCTAGTTTCGATATTCCGAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCGCAATCAAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAATGGCATCCGCCAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTAATTCCTTCTTTATTTAACGTTCAGTTTCATGGATATCCTGATGCCACTGTCTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCACGGTTTTCCCCAACCTCCAAACCGGGGGCAGCAGGCTGATAATATACTGAAGAATCTCCTCTTGCTGATAGGGGTATTTGTCATTCTTGCTCTTCTATGTTGTTAG 708 45.34 MTGISILMAIGFGESTKAPPQNPFSSSDGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTHADPRSKSYPSFDIPNRPSGQRPDTAPPPQSNHFTNHGFGFMGGFAPMASARFGNFTLATAFGGLIPSLFNVQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQQADNILKNLLLLIGVFVILALLCC 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32609875 32610582 + Bda007085.1 Bda10g00312 14200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00312 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 102 IPR013083 -
Bda10g00312 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bda10g00312 235 SUPERFAMILY RING/U-box 37 94 - -
Bda10g00312 235 ProSiteProfiles Zinc finger RING-type profile. 41 82 IPR001841 -
Bda10g00312 235 PANTHER RING ZINC FINGER PROTEIN-RELATED 10 234 - -
Bda10g00312 235 MobiDBLite consensus disorder prediction 96 131 - -
Bda10g00312 235 SMART ring_2 41 81 IPR001841 -
Bda10g00312 235 CDD RING-HC_AtRMA_like 39 83 - -
Bda10g00312 235 Pfam Zinc finger, C3HC4 type (RING finger) 41 81 IPR018957 GO:0046872
Bda10g00312 235 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00250 Bda-Chr3:2251464 Bda10g00312 Bda-Chr10:32609875 3.74E-71 dispersed
Bda10g00312 Bda-Chr10:32609875 Bda10g00322 Bda-Chr10:33200560 8.99E-172 dispersed
Bda10g00312 Bda-Chr10:32609875 Bda01g00547 Bda-Chr1:32387548 3.37E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00312 K10666 - mnt:21392517 400.593