Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda10g00322 | ATGGCAATTGGGTTCGGAGAATCAACTAAGGCTCCACCTCAGAACCCTTTTAGTTCAAGCGATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTTGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATTCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCATGCCGACCCTCGTTCAAAGTCATACCCTAGTTTCGATATTCCGAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCGCAATCAAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAATGGCATCCGCCAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTAATTCCTTCTTTATTTAACGTTCAGTTTCATGGATATCCTGATGCCACTGTCTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCACGGTTTTCCCCAACCTCCAAACCGGGGGCAGCATGCTGATAATATACTGAAGAATCTCCTCTTGCTGATAGGGGTATTTGTCATTCTTGCTCTTCTATGTTGTTAG | 687 | 45.27 | MAIGFGESTKAPPQNPFSSSDGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTHADPRSKSYPSFDIPNRPSGQRPDTAPPPQSNHFTNHGFGFMGGFAPMASARFGNFTLATAFGGLIPSLFNVQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQHADNILKNLLLLIGVFVILALLCC | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33200560 | 33201246 | + | Bda007105.1 | Bda10g00322 | 14210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda10g00322 | 228 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Bda10g00322 | 228 | SUPERFAMILY | RING/U-box | 30 | 87 | - | - | |
Bda10g00322 | 228 | MobiDBLite | consensus disorder prediction | 89 | 123 | - | - | |
Bda10g00322 | 228 | CDD | RING-HC_AtRMA_like | 32 | 76 | - | - | |
Bda10g00322 | 228 | SMART | ring_2 | 34 | 74 | IPR001841 | - | |
Bda10g00322 | 228 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
Bda10g00322 | 228 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 75 | IPR001841 | - | |
Bda10g00322 | 228 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 227 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bda10g00322 | 228 | Pfam | Zinc finger, C3HC4 type (RING finger) | 34 | 74 | IPR018957 | GO:0046872 | |
Bda10g00322 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 95 | IPR013083 | - | |
Bda10g00322 | 228 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 3 | 227 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda10g00322 | Bda14g01207 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda10g00312 | Bda-Chr10:32609875 | Bda10g00322 | Bda-Chr10:33200560 | 8.99E-172 | dispersed | |
Bda10g00322 | Bda-Chr10:33200560 | Bda14g01207 | Bda-Chr14:12051870 | 4.39E-83 | dispersed | |
Bda10g00322 | Bda-Chr10:33200560 | Bda01g00547 | Bda-Chr1:32387548 | 1.87E-100 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda10g00322 | K10666 | - | mnt:21392517 | 398.667 |