Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00322 ATGGCAATTGGGTTCGGAGAATCAACTAAGGCTCCACCTCAGAACCCTTTTAGTTCAAGCGATGGCAACAACTCTAACAACGAAGCAGGTGATTTTGAATGCAATATCTGCTTTGAATTAGCTCAAGACCCAATTGTAACTCTCTGTGGCCACCTCTTTTGCTGGCCTTGTCTTTACAAATGGCTGCACTATCACTCTCACTCTCAGGAATGCCCTGTTTGCAAGGCTCTTATTCAGGAAGAGAAGTTGGTTCCTCTTTATGGCAGGGGCAAAACTCATGCCGACCCTCGTTCAAAGTCATACCCTAGTTTCGATATTCCGAATCGCCCTTCAGGACAAAGGCCTGATACGGCCCCTCCACCGCAATCAAATCACTTTACAAATCACGGGTTTGGATTTATGGGCGGATTCGCACCAATGGCATCCGCCAGGTTTGGGAACTTCACATTGGCAACTGCTTTTGGAGGTCTAATTCCTTCTTTATTTAACGTTCAGTTTCATGGATATCCTGATGCCACTGTCTATGGTACTACTTCTGGTTTTCCTTATGCATTTAATACATATCATGGTGGCCAAGCTCACGGTTTTCCCCAACCTCCAAACCGGGGGCAGCATGCTGATAATATACTGAAGAATCTCCTCTTGCTGATAGGGGTATTTGTCATTCTTGCTCTTCTATGTTGTTAG 687 45.27 MAIGFGESTKAPPQNPFSSSDGNNSNNEAGDFECNICFELAQDPIVTLCGHLFCWPCLYKWLHYHSHSQECPVCKALIQEEKLVPLYGRGKTHADPRSKSYPSFDIPNRPSGQRPDTAPPPQSNHFTNHGFGFMGGFAPMASARFGNFTLATAFGGLIPSLFNVQFHGYPDATVYGTTSGFPYAFNTYHGGQAHGFPQPPNRGQHADNILKNLLLLIGVFVILALLCC 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33200560 33201246 + Bda007105.1 Bda10g00322 14210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00322 228 MobiDBLite consensus disorder prediction 1 24 - -
Bda10g00322 228 SUPERFAMILY RING/U-box 30 87 - -
Bda10g00322 228 MobiDBLite consensus disorder prediction 89 123 - -
Bda10g00322 228 CDD RING-HC_AtRMA_like 32 76 - -
Bda10g00322 228 SMART ring_2 34 74 IPR001841 -
Bda10g00322 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Bda10g00322 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Bda10g00322 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bda10g00322 228 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 IPR018957 GO:0046872
Bda10g00322 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 95 IPR013083 -
Bda10g00322 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda10g00322 Bda14g01207 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00312 Bda-Chr10:32609875 Bda10g00322 Bda-Chr10:33200560 8.99E-172 dispersed
Bda10g00322 Bda-Chr10:33200560 Bda14g01207 Bda-Chr14:12051870 4.39E-83 dispersed
Bda10g00322 Bda-Chr10:33200560 Bda01g00547 Bda-Chr1:32387548 1.87E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00322 K10666 - mnt:21392517 398.667