Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00323 TCAACTGCAGGCAATATGATTAGGCTATTTAAAGTGAAGGAGAAGCAGAGAGAGCTCGCTGAAAATGCGAGTGGCGGGGTACCAATAAAGAAGCAAAGTGCTGGGGAGTTGCGCCTTCACAAAGTTGCAGACATTAGTGAGCTGAACCTACCGAAGTCATGCGCCATATGTTTTCCAAATGGCAAAGATGATCTCATGAACTTTGAGGTTTCTATACGACCTGATGAAGGATATTATTTTGGAGGCACCTTTTTGTTCTCCTTCCAAGTTTTACCCCTCTATCCACATGAAGCACCAAAAGTTAAGTGTAAGACCAAGGTATACCATCCAAATATTGATTTGGAAGGCAATGTTTGCCTTAATATTTTACGAGAAGACTGGAAACCTGTTCTTAATATCAACACTATTATTTATGGATTGTACCATCTTTTCACGGAACCAAACCATGAGGATCCCCTAAATCACGATGCTGCTGCTGTTTTACGAGACAATCCGAAGATATTTGAATCGAATGTGAGAAGGGCTATGGCTGGAGGTTATGTGGGTCAAACCCACTTTCCACGCTGTGTGTAA 573 41.88 STAGNMIRLFKVKEKQRELAENASGGVPIKKQSAGELRLHKVADISELNLPKSCAICFPNGKDDLMNFEVSIRPDEGYYFGGTFLFSFQVLPLYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAAVLRDNPKIFESNVRRAMAGGYVGQTHFPRCV 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33243304 33244213 + Bda007106.1 Bda10g00323 14211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00323 190 SMART ubc_7 36 181 - -
Bda10g00323 190 CDD UBCc 62 174 IPR000608 -
Bda10g00323 190 PANTHER - 16 180 - -
Bda10g00323 190 SUPERFAMILY UBC-like 33 188 IPR016135 -
Bda10g00323 190 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 108 123 IPR023313 -
Bda10g00323 190 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 34 181 IPR000608 -
Bda10g00323 190 Pfam Ubiquitin-conjugating enzyme 50 175 IPR000608 -
Bda10g00323 190 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16 180 - -
Bda10g00323 190 Gene3D Ubiquitin Conjugating Enzyme 31 190 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00323 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - tcc:18610989 362.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00323 Bda-Chr10:33243304 Bda08g00118 Bda-Chr8:1000171 3.82E-25 dispersed
Bda10g00313 Bda-Chr10:32667082 Bda10g00323 Bda-Chr10:33243304 7.47E-144 transposed
Bda10g00323 Bda-Chr10:33243304 Bda04g00324 Bda-Chr4:47372912 2.34E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g866 . . . Bda10g00323 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00323 Bda_Chr10 FPKM 32.757057 34.512722 22.057295 23.904913 21.142363 19.966995 21.827948 21.78047 20.275276