Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00359 ATGCAGAGCTCTAACGAAGAAGATGAAGTTTTCTTCGACTCGACAGCAGAGTTTTTGTTAATGGAGGATTCTTGTCGGGGAAAAGAAGAGAGGGGTTATGAAATGTGGACGAAAGAGCCGCAGAGCGTAAAGAAAAGGCGGGAAAGTTTTCTTCAAGGAATGGGGTTATCCGAATTTGCTTCTAGGAAGGTTTGTGAAGAGAATGTGGCTACGGAAGTTGATCCTTCTTTGAATTTAATGGGGTTAGAAAGGCTGACGGAGTGCAGTGGAGCAGTTTTGAGCTGTTCTTATTCGCCAACTTCGATGTTTGAAAATGTAAAAGATCGAAATAAAAAGGAAACTGAGTTTTCATCTTCTTCTCCGCAACTTGTACATGGCCAAGCAGAGGCTGGTGGAGAAGAAGATAAGAGTTTTGATGAAAGGAAAATCAAAATAAAGAGCTGGTGGAAGTCGTTTATGAGCAAAAGCAGAGCTAAAACGAGTTTGTATGAGGAATTTAAACTGGAATCCGAAACGCCGAGAAGATCGAGGATTAAGGTGAAGCAAAACAAAAAGAAATGCATGGAATTATCTGCTCTATATTACAGACAGAACTTTCGTGCCCATGAGGGATCCATTTGGACGATGGCATTCAGTCCCGACGGCCAATTTCTTGCAAGTGGAGGCGAAGATGGAATCGTACGAGTTTGGCGAGTATCGTACAATGAAGCCTTGGGTCATTTTTTAACACCCGAAGGCGATTTAGGTAGGAAAGTGAGCGGGAAAAAGAAAAAGTTTCTCGGGAAACAAACAGCTTGTGGTACTGTCATGGTTCCAGAAAAGCTTTTTCGGATCGAAGAATCGCCCGTCCAAGAATTTCACGGCCACTCCAGTGATATCCTTGACTTGGCATGGACTAATTCCATTTGTCTTCTATCATCTTCGATGGATAAAACGGTTCGTTTGTGGGAAGTAGGCTGCAATAGCTGTTTAAATATTTTTCGTCACAAAGACTATGTTACATGCATCCAGCTCAATCCTGTGGATGAAAACTACTTCATATCTGGGTCTGTTGATGGAAAAGTTCGGATTTGGGGAGTAAACGAAAAGCAGGTGATCGATTGGATCGATATCCGAGATATAATTACTGCTATATCATACCAACCAAATGGGAAGGGATTTATCGTTGGTTCCATTACCGGCAATTGCCGCTTCTACACATCCACAGATGATTATCTGGAGCTAGATGGACAGATAAACATTCAAGGAAAAAGAAAGGGCTTGGGCAAAAGAATCACTGGAATACAGTTTTCTCGTGAAAATTCTCAAAGAGTGATGATAACATCAGAAGACTCTAAAGTCTACATCTTCGAGGGGCTTGACATCATTCACAAATATAAAGGTCTTCCAAAGTCGGGAAGCCAAATGTGGGGTTCGTTTACTCCGACCGAGAAGCATATTGTTTCCATCGGAAACGACTCCCGTGTTTACATTTGGAACCACGAAACGGTCAGTTTTCCAGCATACATGAAGAAACGGAGAAAAACCATCACTTCTTGCGAGCATTTTTTCTCGGAAGGCGTTTCGGTTGCAATTCCATGGAAGGGCCACGGAAGCGAATCGGGAAGTTTCAGAAGTTCTGGGGATGATCCGAATTCTTCCTTCTCTAGTCGAGATTCAGAGAATACTTTGTTCGGGAATTGGTTATTTGTCGATGACCTGTCCAAAGGCTCGGCAACTTGGCCAGAAGAGAAGCTCCTTCCTCGCTGGAATTTGCCTGGTGAAGATGTTTCCAACTCGATCAATCCAGTTATGTGGGGCCTCGTTATTGTAGGAGCTGGATTGGACGGAACAATTAGGACGTTCCACAACTACGGATTGCCCTGTAAAGCTTTAGGTTTCGATTGA 1887 43.08 MQSSNEEDEVFFDSTAEFLLMEDSCRGKEERGYEMWTKEPQSVKKRRESFLQGMGLSEFASRKVCEENVATEVDPSLNLMGLERLTECSGAVLSCSYSPTSMFENVKDRNKKETEFSSSSPQLVHGQAEAGGEEDKSFDERKIKIKSWWKSFMSKSRAKTSLYEEFKLESETPRRSRIKVKQNKKKCMELSALYYRQNFRAHEGSIWTMAFSPDGQFLASGGEDGIVRVWRVSYNEALGHFLTPEGDLGRKVSGKKKKFLGKQTACGTVMVPEKLFRIEESPVQEFHGHSSDILDLAWTNSICLLSSSMDKTVRLWEVGCNSCLNIFRHKDYVTCIQLNPVDENYFISGSVDGKVRIWGVNEKQVIDWIDIRDIITAISYQPNGKGFIVGSITGNCRFYTSTDDYLELDGQINIQGKRKGLGKRITGIQFSRENSQRVMITSEDSKVYIFEGLDIIHKYKGLPKSGSQMWGSFTPTEKHIVSIGNDSRVYIWNHETVSFPAYMKKRRKTITSCEHFFSEGVSVAIPWKGHGSESGSFRSSGDDPNSSFSSRDSENTLFGNWLFVDDLSKGSATWPEEKLLPRWNLPGEDVSNSINPVMWGLVIVGAGLDGTIRTFHNYGLPCKALGFD 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34511239 34514310 + Bda007163.1 Bda10g00359 14247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00359 628 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Bda10g00359 628 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Bda10g00359 628 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Bda10g00359 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Bda10g00359 628 PANTHER WD REPEAT DOMAIN 44 6 623 IPR040324 -
Bda10g00359 628 Pfam WD domain, G-beta repeat 281 316 IPR001680 GO:0005515
Bda10g00359 628 Pfam WD domain, G-beta repeat 322 358 IPR001680 GO:0005515
Bda10g00359 628 Pfam WD domain, G-beta repeat 198 230 IPR001680 GO:0005515
Bda10g00359 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 361 - -
Bda10g00359 628 MobiDBLite consensus disorder prediction 112 136 - -
Bda10g00359 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 368 IPR001680 GO:0005515
Bda10g00359 628 ProSitePatterns Trp-Asp (WD) repeats signature. 304 318 IPR019775 -
Bda10g00359 628 Gene3D - 181 530 IPR015943 GO:0005515
Bda10g00359 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 318 IPR001680 GO:0005515
Bda10g00359 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 233 - -
Bda10g00359 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 318 - -
Bda10g00359 628 SUPERFAMILY WD40 repeat-like 193 613 IPR036322 GO:0005515
Bda10g00359 628 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 623 - -
Bda10g00359 628 SMART WD40_4 411 451 IPR001680 GO:0005515
Bda10g00359 628 SMART WD40_4 320 359 IPR001680 GO:0005515
Bda10g00359 628 SMART WD40_4 192 231 IPR001680 GO:0005515
Bda10g00359 628 SMART WD40_4 361 400 IPR001680 GO:0005515
Bda10g00359 628 SMART WD40_4 279 317 IPR001680 GO:0005515
Bda10g00359 628 SMART WD40_4 452 493 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00359 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 655.981
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda10g00359 Bda14g01058 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00130 Bda-Chr5:6011416 Bda10g00359 Bda-Chr10:34511239 3.77E-107 dispersed
Bda10g00359 Bda-Chr10:34511239 Bda14g01058 Bda-Chr14:9062107 1.31E-161 dispersed
Bda10g00359 Bda-Chr10:34511239 Bda11g01368 Bda-Chr11:16368883 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00359 Bda_Chr10 FPKM 21.866396 21.806837 47.09256 41.676151 33.52422 36.798271 33.347092 54.773643 55.132988