Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00372 ATGCTTTTGAGTTCCTTCTTTCTCGTTTCTTCTTCCCAGAAATCTCCCTTAAACAAAGCAATTGTACAACTCATGGATATAAACAACCCTACTAGCTGGGATCTTGAACTAGTGGCCATGGAAGATCATCTCCTCCACAGCCAAGTTCCTTTCAGTCATCATTCTCTTTTGCCCTATTTATATATTCCCGTTGATCAAATCCCGTACAATAACCAGCCGACCTCTGCTAATTTTAACTGTCAAGTGGCGAATTGTGTGAAGGGTGATGAACAAGAATCAGATCAAGATCTTGGTGCAATGAAGGAGATGATGTACAGAATTGCATCTATGCAGCCAGTCGACATTGACCCTGCCACCATCCCAAAGCCGAAACGGAAGAATGTTCGAATCAGTGACGACCCTCAGAGCGTAGCTGCCCGTTTACGAAGACAGAAAATAAGCGAGAAAATGCGTATCCTCCAGCGTCTCGTCCCGGGAGGAACCCGATTGGACACGGCTACCATGCTAGATGAAGCAATTCGATATATCAAGTTCTTAAAACGACAAATCCGCTTGTTACAGTCTAATCATCAACCTCAAAGCATTAACTTCAGCTTGGGTTCATCTTCTTCAATTCCAATAGATTGGTCTTTGAGAGCTAATGAAGGTGCAGCCTCCACTGAACCTGGACTTGGAAGCAGCACAGGAAGAAGAAAAATAGGCTACCTGAAGCATGAGGTGATTAATGATTGA 732 43.72 MLLSSFFLVSSSQKSPLNKAIVQLMDINNPTSWDLELVAMEDHLLHSQVPFSHHSLLPYLYIPVDQIPYNNQPTSANFNCQVANCVKGDEQESDQDLGAMKEMMYRIASMQPVDIDPATIPKPKRKNVRISDDPQSVAARLRRQKISEKMRILQRLVPGGTRLDTATMLDEAIRYIKFLKRQIRLLQSNHQPQSINFSLGSSSSIPIDWSLRANEGAASTEPGLGSSTGRRKIGYLKHEVIND 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35118386 35119117 + Bda007187.1 Bda10g00372 14260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00372 243 SMART finulus 136 185 IPR011598 GO:0046983
Bda10g00372 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Bda10g00372 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 201 IPR045843 GO:0003700|GO:0006355
Bda10g00372 243 CDD bHLH_AtIND_like 131 191 - -
Bda10g00372 243 Coils Coil 169 189 - -
Bda10g00372 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 191 IPR036638 GO:0046983
Bda10g00372 243 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Bda10g00372 243 Gene3D - 134 197 IPR036638 GO:0046983
Bda10g00372 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 201 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00329 Bda10g00372 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00158 Bda-Chr1:22494252 Bda10g00372 Bda-Chr10:35118386 5.66E-11 dispersed
Bda04g00329 Bda-Chr4:47712302 Bda10g00372 Bda-Chr10:35118386 2.49E-98 dispersed
Bda06g00341 Bda-Chr6:5469902 Bda10g00372 Bda-Chr10:35118386 1.48E-10 dispersed
Bda10g00372 Bda-Chr10:35118386 Bda10g00844 Bda-Chr10:42835826 9.83E-31 dispersed
Bda10g00372 Bda-Chr10:35118386 Bda08g01375 Bda-Chr8:54326517 1.32E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16491 PF00010 HLH 5.90E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00372 - - peu:105113195 196.052