Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00393 ATGGGGAAGCGAAGAGTTACCTACGCCGATCACACTGCCTCTGGCCGTTCTCTCCGATACATTGAAAATTTCGTGCTAAAAAAAGTCCTTCCTTTTTACGGCAACACGCACACTGGGGACAGCTACGTGGGTCACCGGACAACAATGACAGTGAACGAAGCATCAGTCTTCATCAAGAATTGCTTGGGAGGTGGAGAAGAAGACGTTCTTCTCTTCTGCGGATCGGGCTCGACAGCCGCCTTTAAAAGACTGCAAGAAGTAATGGGAATTGCAGTGGCATCAATTATGAGAGAGAGGATGATAAAAACCCTAACCAAGGAAGAAAGGTGGGTGGTTTTTGTGGGACCCTTTGAACACCACTCCAACCTCCTCTCATGGCGGCAGAGCTTAGCCGAAGTGGTGGAGATTGGACTGGATAAAAATGGGTTGCTAGACATGGAAGCTCTAAAGCTTCAGCTGGAGGTCTACAAGCCAGCTAACAGACCAATGCTTGGATCTTTCTCCGCCTGTAGTAATGTAACAGGAATTCTCTCTGATACAAGAAAAATTGCTCGTCTTCTTCATCAGTATGGGGCTTTTGCATGCTTTGATTTCGCTGCAAGCGGGCCATACGTGAAGATTGATATGAAATCAGGTGAGATGGACGGCTATGATGCAGTTTTCATCAGTGTACACAAGTTCATCGGTGGGCCAGGATCGCCCGGGATCCTTCTGATGAACAAGGCTTTGTACCAGCTGAGAAGTCATCCACCTTCAACCTGCGGAGGGGGAACTGTCGCTTATGTCAATGGCTTCAGTGAGAAACAAACCTTTATCTTCCAACATAGCACGAGTCAAAATTCTCACATTAAGTTTTGGTGTCCAAATTTTGATACCTTGTACTATGAAGAAATAGAAGAACGAGAAAATGGAGGAACCCCACAAATAATTCAAATCATAAGAGCTGGATTGGCGTTCTGGGTGAAAGAATACATAAGTTATCAAGTGATTGACAAACAAGAGGAAAACTTCATACATAGAGCATTAGAGAGGCTTCTTCCAAACAAAAACATTGGTGTTTTAGGAAACACAAGTGCAAAGAGACTATCCATACTCTCCTTTCTCATATACTCAACCACCAATTCCACGCTACATCATGAAACAAAGCAAGAACTTAACCTTTGGAGAGAGTCAGGAAATAAGAGGGATAAGCCTCTTCATGGTGCTTTTGTCGCAACCCTTCTCAGCGACCTTTTTGGGATCATGGCTCGAGGCGGCTGCAGCTGTGCTGGTCCGTATGGCCATACCTTGCTTAACATTGAGGAGACTCACTCCCAAGACTACAGATCTGCCATTGAAAAGGGCTATCTTGGAGTCAAACCAGGTTGGACAAGAGTGAGCTTCCCTTACTACATGTCCAATGAGGAATTCGAGTTCATATTAGATGCAATGGAGTTTATAGCCCTTTATGGTCAGAGGTTTCTTCCTTTGTATAACTTCAATGTGACAGATGGAAGCTGGAAGCTGAAGAAGAAAGCCATAAACGAGTTAATGAGGAAGAAGAATACCTTCTTCAATTTTGAGAAAGAAAATACTGATAATGGAGAATCCAAAAGCAAATATGAATCATATTTACATGCTGCCAGAAGTATTGCCAATGTCCTTCCCAAGTTTCCTGCTCAGAGAAAGCTTCAAGAGGACATTGATCCAAGTTTCCTTTTCTTCAGGGTGTAG 1713 43.9 MGKRRVTYADHTASGRSLRYIENFVLKKVLPFYGNTHTGDSYVGHRTTMTVNEASVFIKNCLGGGEEDVLLFCGSGSTAAFKRLQEVMGIAVASIMRERMIKTLTKEERWVVFVGPFEHHSNLLSWRQSLAEVVEIGLDKNGLLDMEALKLQLEVYKPANRPMLGSFSACSNVTGILSDTRKIARLLHQYGAFACFDFAASGPYVKIDMKSGEMDGYDAVFISVHKFIGGPGSPGILLMNKALYQLRSHPPSTCGGGTVAYVNGFSEKQTFIFQHSTSQNSHIKFWCPNFDTLYYEEIEERENGGTPQIIQIIRAGLAFWVKEYISYQVIDKQEENFIHRALERLLPNKNIGVLGNTSAKRLSILSFLIYSTTNSTLHHETKQELNLWRESGNKRDKPLHGAFVATLLSDLFGIMARGGCSCAGPYGHTLLNIEETHSQDYRSAIEKGYLGVKPGWTRVSFPYYMSNEEFEFILDAMEFIALYGQRFLPLYNFNVTDGSWKLKKKAINELMRKKNTFFNFEKENTDNGESKSKYESYLHAARSIANVLPKFPAQRKLQEDIDPSFLFFRV 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35921391 35924002 - Bda007219.1 Bda10g00393 14281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00393 570 Gene3D Aspartate Aminotransferase, domain 1 316 483 IPR015422 GO:0003824
Bda10g00393 570 PANTHER - 289 570 - -
Bda10g00393 570 PANTHER CYSTEINE DESULFURASE 1 273 - -
Bda10g00393 570 Gene3D - 7 315 IPR015421 GO:0003824
Bda10g00393 570 Pfam Aminotransferase class-V 29 470 IPR000192 -
Bda10g00393 570 PANTHER CYSTEINE DESULFURASE 289 570 - -
Bda10g00393 570 PANTHER - 1 273 - -
Bda10g00393 570 SUPERFAMILY PLP-dependent transferases 4 478 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00393 - - - mnt:21400501 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00393 Bda-Chr10:35921391 Bda10g00395 Bda-Chr10:36008515 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1289 . . . Bda10g00393 . . . Bma15g00795 . . . Cma07g00799 . Car07g00786 Sed14g0225 . . Bhi03g01355 Tan03g1312 Cmetu08g1351 . Hepe04g1115 . . . . . . . . . . . . . . . . . . . . . Bpe10g00255 . . . . . Cmo07g00821 . . . . . . . . . . . . . . . . . . . . . . Chy02g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00393 Bda_Chr10 FPKM 13.913257 13.760939 7.08069 6.696675 10.215632 11.051968 12.554955 7.847688 6.935163