Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00405 ATGAATGCAAAAATTATTTACTCAGTAGCTCCGGCTATGGGTCATAACCAGGAATCTCATCCAGAGTCACATTTAAGAGTTCCTGCAATCATAAATGCACTTGAAATGATGGAACTTACTCCGAAGTTCCGCAACACAGAGATCATCGAACTTCAAAATTTTAAGCCAGCTTTGCTAGATGATGTTGCTAGTGTTCATTCAAAAGCCTATATATATGGTCTTGAGAAGGCTATGGATAAAGCATTACAAGATGGAATTATTTTCATTGACAATTCAGGGCCAACATATGCTACCGCAACTACGTATAAGGAGTCATTACTCGCAGCTGGAGCAGGAATTGCCTTAATTGACTCAGTGGTTACAGCATCAAAAATCTCTAAGGATCCTCCAATTGGTTTTGCCTTGATTAGACCTCCGGGTCATCACGCAATTCCAAAGGGACCCATGGGCTTTTGTGTTTTTGGCAACATCGCTATAGCGGCCCGTTATGCCCAACGTGCACATGGGTTGAAACGTGTATTTATAATCGATTTTGATGTCCACCATGGAAATGGAACAAATGATGCTTTTTACGATGATCCGGATATATTTTTCCTTTCAACTCATCAAGACGGAAGCTATCCAGGTACTGGTAAAATTGACAACGTAGGTTGTGGAAAAGGTGAAGGGATGACACTAAATCTTCCTCTTCCAGGAGGCTCAGGTGATATCGCCATGAGAACAGTGTTTGATGAAGTGATTGTACCGTGTGCTCAAAGATTTAAGCCTGATATCATTCTCGTTTCGGCCGGGTATGATGCTCATGTGTTGGATCCATTGGCCGGTTTACAATTTACCACGGCGACATATTACATGTTGGCATCGAGTATTAAACAACTAGCGAAAGAATTATGTGGGGGCCGATCCGTGTTCTTTTTGGAAGGGGGCTATAATCTCAAGTCTCTCTCTAACTCAATCTCGGACTCGTTCCGAGCTTTTCTTGGGGAGCCAAGCTTGGCATCCGAGTTTGACGACCCTACGTATTTGTATGAAGAGCCATCGACTAAACTCCAGCGAGCAATTGAAAAGGTGAAGCAAATACACTCCTTATGA 1092 42.58 MNAKIIYSVAPAMGHNQESHPESHLRVPAIINALEMMELTPKFRNTEIIELQNFKPALLDDVASVHSKAYIYGLEKAMDKALQDGIIFIDNSGPTYATATTYKESLLAAGAGIALIDSVVTASKISKDPPIGFALIRPPGHHAIPKGPMGFCVFGNIAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDNVGCGKGEGMTLNLPLPGGSGDIAMRTVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLAGLQFTTATYYMLASSIKQLAKELCGGRSVFFLEGGYNLKSLSNSISDSFRAFLGEPSLASEFDDPTYLYEEPSTKLQRAIEKVKQIHSL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36169169 36175720 - Bda007236.1 Bda10g00405 14293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00405 363 CDD HDAC_classII 20 327 - -
Bda10g00405 363 Gene3D Histone deacetylase domain 2 362 IPR037138 -
Bda10g00405 363 Pfam Histone deacetylase domain 20 323 IPR023801 -
Bda10g00405 363 PRINTS Histone deacetylase superfamily signature 172 187 IPR000286 -
Bda10g00405 363 PRINTS Histone deacetylase superfamily signature 256 266 IPR000286 -
Bda10g00405 363 PRINTS Histone deacetylase superfamily signature 138 161 IPR000286 -
Bda10g00405 363 PANTHER HISTONE DEACETYLASE 14 2 362 - -
Bda10g00405 363 SUPERFAMILY Arginase/deacetylase 13 359 IPR023696 -
Bda10g00405 363 PANTHER HISTONE DEACETYLASE 2 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00405 - - - jre:108996362 620.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00617 Bda-Chr1:33163066 Bda10g00405 Bda-Chr10:36169169 7.95E-07 transposed
Bda07g00699 Bda-Chr7:8237324 Bda10g00405 Bda-Chr10:36169169 1.33E-50 transposed
Bda15g00660 Bda-Chr15:10062218 Bda10g00405 Bda-Chr10:36169169 5.83E-48 transposed
Bda12g00596 Bda-Chr12:17210653 Bda10g00405 Bda-Chr10:36169169 2.13E-10 transposed
Bda15g00544 Bda-Chr15:8497047 Bda10g00405 Bda-Chr10:36169169 1.26E-19 transposed
Bda15g00620 Bda-Chr15:9375880 Bda10g00405 Bda-Chr10:36169169 7.94E-36 transposed
Bda10g00379 Bda-Chr10:35433119 Bda10g00405 Bda-Chr10:36169169 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00405 Bda_Chr10 FPKM 0.644678 0.669752 26.788668 28.459309 0.0 0.0 0.0 0.0 0.0