Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00407 ATGGCCGGCGGCGGCGGCCGCACTATCGGCGTCCTTAACGTGGCGGAGAAGCCGTCCGTGGCCAAATCCGTGGCTTCCATACTTTCCAGGAACCAAGGATTGCGAGTGCGAGAAGGCCGCTCTCGCTACAACAAGATATTCGAGTTCAACTACTCTATTCGGGGACAGCCCTGTCACATGCTCGTAACCTCCGTCACCGGTCACCTCATGGAGCTTGAATTCGAAGAGCGGTACAGGAAATGGAACTCCTGCGATCCCGCGGATCTTTACAGCGCTCCAGTCCAAAAGCTTGTTCCCGAGGACAAGATAGATATAAAGAGGACATTGGAGGAAGAAGCTCGGCGGTGCCAGTGGCTTGTATTGTGGCTGGACTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTGATAGAAGTTTGCAGAGCAGTGAATCACCATCTCACTCTTAAGAGGGCTCGCTTCTCTGCATTGATTGATAGAGATATCCATGAAGCTGTGCAAAATCTTGTTCAACCTAATCAATGGTTTGCTGATGCTGTTGATGCTAGGCAAGAAATAGATCTTCGTATTGGTGCTTCATTTACAAGGTTTCAGACCATGCTGTTGAGAGACAGATTTATTATTGACACTGCCACAGATGACCGGAATCTAATTTTGAGTTATGGACCTTGTCAATTCCCTACTCTTGGCTTTATTGTGGAACGTTATTGGGAGGTACAATCACACGAGCCAGAAGAATTTTGGACCATTAACTGTTCACACAACTCAGATGAAGGTGTAGCTACTTTTAACTGGATGAGAGGACATTTGTTCGATTATACTTGTGCTGCTACAATATACGAGATGTGTGTACAGGAACCAACTGCCACTGTCTGTAATGTTAGAAACCAACAAAGACTGAAACATCCTCCACATCCTCTTAATACCATTGAGCTTGAAAAGCGTGCTTCTCGATATTTCCGTATGAGCTCTGAACATACTATGAAGGTAGCAGAAGAACTATACCAAGCTGGTTTCATCAGTTATCCACGTACTGAGACTGATTGCTTTTCTCAGAGGACTGATCTACAAGCAATTGTGCAAGAGCAACAGAACCATCCTGTTTGGGGAACATATGCACAACGACTGTTGGATCCTGGAGAGGGACTTTGGAGAAATCCAAGCAATGGTGGCCACGATGATAAGGCACATCCTCCTATCCATCCAACAAAGTTTTCTCCAGGAGAAAATGGGTGGACTCAAGATCACAATAGGCTTTACGAGCTGGTTGTTCGACATTTTCTAGCATGCGTCTCACAGCCAGCCATAGGAGCTGTGACTACTGTTGAAATTGACATTGCTGGTGAATTGTTTTCAGCATCGGGGAGAGCAATTATAGCAAAAAATTACTTGGATGTATACTGCTATGAATCGTGGGGAGGATCCATTATTCCAACTTATGTTTCTGGACAACAGTTTACTCCTACAACATTGACTCTTGATCCTGGAGTTACAAGACCACCACCGCTTTTGAGTGAAGCTGATTTGTTGAGTTGTATGGATAAGGAGGGTATTGGTACAGATGCAACGATGCATGATCACATAAAGAAGCTATTGGACAGATTTTATGCAACTAAGGACTCAAACACTCATTTCTCACCAACTAATCTTGGAGAGGCACTGGTATTGGGATATGACGATATGGGGTATAAGTTATGGAAACCATACCTCAGAGCTACTATGGAACGAGACATGAAAGCAGTTAGTGAAGGCAATAAGAGCAAAGCTGAAGTTTTGGTGACTTGCTTGCAGCAGATGAAGGCTTGTTTTTTAGATGCAAGGTTGAATAAAATAAAACTTCTTGAAGCCATGGGTATATTTTTCGAAAGATCCAACAGATCTAGTGTGAATGATCAGCATGCAACAGGAGAAATTGTTCGCCGGTGTGGAGTTTGCCAGGAATTAGATATGGTTCTTAAAAAAATCAGGGATGGCAATTACATGGTTGGCTGCTTGGGATATCCGCAGTGCAGGAACGTTGTATGGCTCCCTGGATCCATATCAGAAGCAGCTGTAACATCTAACATTTGCGAGTCTTGCACTCCAGGTCCTGTTTACTTGATCCAATTCAAATTTCGCTCCCTGGAAATACCACCAAATTACAACCCTAACCATTTGGGTTGTATAGGTGGTTGTGATGTGATTCTTAGGCAACTGACAGAAATATGTGGAACTGGTTCTCGGATTTCAGCAGGAAGAGGTCGGGGAGTCTCACAATCTTCCAATGATGTTCCACGAAGTAACACTAGGCAGGCTGTTTGCATATACTGCCAGCAACCTGGACACTCTTCTAATGACTGCTCTTCTCGGCTTCCCAGCTCCCATCATGCTCAATCACGCGGACAAAGTGGAGAATGTTCAGTTTCATGCAGCACATGTGGGACACCATGCATCATCCGAACTGCTAATACTGCTAATAACAGGGGAAGAAAATTCTACTCATGTCAATCTCAAGAGTGCAACTTCTTTGTATGGGAAGATAGCTTAAACAATGGCACCGGAGGAACCGGTACTTCACGTGCAAGCATGAGGAGTACCCCGGCAGCTAATCCCAGCAGGGGTCGTGGTCGTGGTCGGAGTGGAGCACAAACTCCTTCTACCACTTTCGTATCTGCAACGGGCGAGCCAATATCTGGTAGAAGATGCTTTACTTGTGGCGATCCATCACACTTTGCAAACGCATGCCCAAATCGAGGTACCTGA 2742 45.08 MAGGGGRTIGVLNVAEKPSVAKSVASILSRNQGLRVREGRSRYNKIFEFNYSIRGQPCHMLVTSVTGHLMELEFEERYRKWNSCDPADLYSAPVQKLVPEDKIDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNHHLTLKRARFSALIDRDIHEAVQNLVQPNQWFADAVDARQEIDLRIGASFTRFQTMLLRDRFIIDTATDDRNLILSYGPCQFPTLGFIVERYWEVQSHEPEEFWTINCSHNSDEGVATFNWMRGHLFDYTCAATIYEMCVQEPTATVCNVRNQQRLKHPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDCFSQRTDLQAIVQEQQNHPVWGTYAQRLLDPGEGLWRNPSNGGHDDKAHPPIHPTKFSPGENGWTQDHNRLYELVVRHFLACVSQPAIGAVTTVEIDIAGELFSASGRAIIAKNYLDVYCYESWGGSIIPTYVSGQQFTPTTLTLDPGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSNTHFSPTNLGEALVLGYDDMGYKLWKPYLRATMERDMKAVSEGNKSKAEVLVTCLQQMKACFLDARLNKIKLLEAMGIFFERSNRSSVNDQHATGEIVRRCGVCQELDMVLKKIRDGNYMVGCLGYPQCRNVVWLPGSISEAAVTSNICESCTPGPVYLIQFKFRSLEIPPNYNPNHLGCIGGCDVILRQLTEICGTGSRISAGRGRGVSQSSNDVPRSNTRQAVCIYCQQPGHSSNDCSSRLPSSHHAQSRGQSGECSVSCSTCGTPCIIRTANTANNRGRKFYSCQSQECNFFVWEDSLNNGTGGTGTSRASMRSTPAANPSRGRGRGRSGAQTPSTTFVSATGEPISGRRCFTCGDPSHFANACPNRGT 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36221701 36239296 - Bda007238.1 Bda10g00407 14295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00407 913 PANTHER DNA TOPOISOMERASE 3-ALPHA 11 703 - -
Bda10g00407 913 SUPERFAMILY Retrovirus zinc finger-like domains 755 785 IPR036875 GO:0003676|GO:0008270
Bda10g00407 913 SMART c2hcfinal6 766 782 IPR001878 GO:0003676|GO:0008270
Bda10g00407 913 SMART c2hcfinal6 894 910 IPR001878 GO:0003676|GO:0008270
Bda10g00407 913 PRINTS Prokaryotic DNA topoisomerase I signature 419 435 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 PRINTS Prokaryotic DNA topoisomerase I signature 517 531 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 PRINTS Prokaryotic DNA topoisomerase I signature 119 132 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 PRINTS Prokaryotic DNA topoisomerase I signature 337 346 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 PRINTS Prokaryotic DNA topoisomerase I signature 219 237 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 SUPERFAMILY Prokaryotic type I DNA topoisomerase 11 601 IPR023405 -
Bda10g00407 913 SMART toprim5 10 145 IPR006171 -
Bda10g00407 913 MobiDBLite consensus disorder prediction 846 886 - -
Bda10g00407 913 PANTHER PROKARYOTIC DNA TOPOISOMERASE 11 703 IPR000380 GO:0003677|GO:0003917|GO:0006265
Bda10g00407 913 Gene3D Topoisomerase I, domain 3 243 501 IPR013825 -
Bda10g00407 913 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 332 346 IPR023406 GO:0003917
Bda10g00407 913 ProSiteProfiles Zinc finger CCHC-type profile. 893 910 IPR001878 GO:0003676|GO:0008270
Bda10g00407 913 Pfam Toprim domain 12 156 IPR006171 -
Bda10g00407 913 SMART topIban2 148 249 IPR003601 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 Pfam DNA topoisomerase 173 592 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 CDD TOPRIM_TopoIA_TopoIII 11 169 IPR034144 -
Bda10g00407 913 Gene3D Topoisomerase I, domain 2 179 603 IPR013824 -
Bda10g00407 913 ProSiteProfiles Toprim domain profile. 10 155 IPR006171 -
Bda10g00407 913 SMART topIaneu2 295 555 IPR003602 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 Gene3D - 6 172 - -
Bda10g00407 913 MobiDBLite consensus disorder prediction 870 886 - -
Bda10g00407 913 MobiDBLite consensus disorder prediction 846 862 - -
Bda10g00407 913 MobiDBLite consensus disorder prediction 387 408 - -
Bda10g00407 913 CDD TOP1Ac 176 603 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bda10g00407 913 Pfam GRF zinc finger 802 841 IPR010666 GO:0008270
Bda10g00407 913 Gene3D Topoisomerase I, domain 4 303 433 IPR013826 -
Bda10g00407 913 SUPERFAMILY Retrovirus zinc finger-like domains 887 911 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00407 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - jre:109018851 1543.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00407 Bda-Chr10:36221701 Bda11g00440 Bda-Chr11:4677558 9.37E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1323 . . . Bda10g00407 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007676 1 4 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 2 2 1 1 1 2 35