Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda10g00414 | ATGGGAAAGGAAGATTTGCTACAAAGTACTAACCATAGTGCGAGTGATGATTGTTGCTCACATAATGATGTAACTGAAAGTAGAGATAGGGAGGCCAGGTCAGCAACATGTCGGGTGTGCCAATGTACAGAGTCTGATAAAAGAGGGGATGCTGTTTTAGGATTTTTGGGCATCACCCTTTCAGAAAGTAAAACCAATAAGAATGTGAAGCTTGACAGCCCTTTAAATGCTAAAAGTTCTCCCTCTAAGCAGAATGATGGAAAGGGATCTAGTGTAGTTGAGTTCATAGGTCCTGATGGTGAGGTTTTTGTTTGTAATGCTGATATAGAAACGGGTTCATGTCTCAGTCAAGATGAGTTGGTCGAACTTGGTTGTTCTTGCAAAAATGACCTTGCTCTTGTACACTATGCATGTGCTCTTAAGTGGTTTATCAGCCATGGATCTACTGTCTGTGAAATCTGTGGTTGTGTTGCAAAAAATATTAGAACAGCTGACTTTAGAAAGGTCGTGGCTTCCTTGAAGGAATATGAAGCCTTAAGAGAAAGGACTGCTAGTGGGGAACCTAATCCTGCTGGGCTTCATGATTCTGACTCTACTATTGATCCCGATGCAGTTGCTGCTATTCGCCGACAAAGACTTAGTGAAATATCCTTGTGGTTTAGTCCTCATAATCGTAATAACCATAACTATATGGCATTCTCACAGGTTCTTTCTGAACTGCCTCTGAGTTCTGCTACAGGAGAAGATGTTCCTGCTGAAAATGCAGCGACAAAGTGGGCTGTTGAATGTACTGGGATTCTTCTTGCGACAGGATTACTTACTGTTACTCTTGCTTGGCTCATAGCCCCTCATGTGGGAAAGAAAACAGCTAGCAGTGGTCTTCATATTCTTCTTGGAGGCATATGTGCTTTAACAGTTGTGGTTTTCTTTCGATTTTTTGTGCTGACCAGAATAAAATATGGACCGGCGAGATACTGGGCTATCCTTTTTGTCTTCTGGTTTCTTGTGTTTGGTATTTGGGCTTCACGAACACACAGTTCTCATACGACATGA | 1053 | 41.98 | MGKEDLLQSTNHSASDDCCSHNDVTESRDREARSATCRVCQCTESDKRGDAVLGFLGITLSESKTNKNVKLDSPLNAKSSPSKQNDGKGSSVVEFIGPDGEVFVCNADIETGSCLSQDELVELGCSCKNDLALVHYACALKWFISHGSTVCEICGCVAKNIRTADFRKVVASLKEYEALRERTASGEPNPAGLHDSDSTIDPDAVAAIRRQRLSEISLWFSPHNRNNHNYMAFSQVLSELPLSSATGEDVPAENAATKWAVECTGILLATGLLTVTLAWLIAPHVGKKTASSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSSHTT | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 36376864 | 36379200 | - | Bda007248.1 | Bda10g00414 | 14302 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda10g00414 | 350 | MobiDBLite | consensus disorder prediction | 70 | 91 | - | - | |
Bda10g00414 | 350 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 97 | 161 | IPR011016 | GO:0008270 | |
Bda10g00414 | 350 | SUPERFAMILY | RING/U-box | 117 | 157 | - | - | |
Bda10g00414 | 350 | PANTHER | ZINC FINGER, RING-CH-TYPE | 19 | 349 | - | - | |
Bda10g00414 | 350 | SMART | ringv_2 | 114 | 155 | IPR011016 | GO:0008270 | |
Bda10g00414 | 350 | Pfam | RING-variant domain | 118 | 154 | IPR011016 | GO:0008270 | |
Bda10g00414 | 350 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bda10g00414 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 158 | IPR013083 | - | |
Bda10g00414 | 350 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Bda10g00414 | 350 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 19 | 349 | - | - | |
Bda10g00414 | 350 | MobiDBLite | consensus disorder prediction | 70 | 89 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda10g00414 | Bda-Chr10:36376864 | Bda05g00947 | Bda-Chr5:57993974 | 6.50E-09 | dispersed | |
Bda10g00414 | Bda-Chr10:36376864 | Bda14g00275 | Bda-Chr14:1858375 | 7.42E-11 | transposed | |
Bda10g00414 | Bda-Chr10:36376864 | Bda15g00243 | Bda-Chr15:5071312 | 7.10E-11 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda10g00414 | - | - | pvy:116145684 | 484.952 |