Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00414 ATGGGAAAGGAAGATTTGCTACAAAGTACTAACCATAGTGCGAGTGATGATTGTTGCTCACATAATGATGTAACTGAAAGTAGAGATAGGGAGGCCAGGTCAGCAACATGTCGGGTGTGCCAATGTACAGAGTCTGATAAAAGAGGGGATGCTGTTTTAGGATTTTTGGGCATCACCCTTTCAGAAAGTAAAACCAATAAGAATGTGAAGCTTGACAGCCCTTTAAATGCTAAAAGTTCTCCCTCTAAGCAGAATGATGGAAAGGGATCTAGTGTAGTTGAGTTCATAGGTCCTGATGGTGAGGTTTTTGTTTGTAATGCTGATATAGAAACGGGTTCATGTCTCAGTCAAGATGAGTTGGTCGAACTTGGTTGTTCTTGCAAAAATGACCTTGCTCTTGTACACTATGCATGTGCTCTTAAGTGGTTTATCAGCCATGGATCTACTGTCTGTGAAATCTGTGGTTGTGTTGCAAAAAATATTAGAACAGCTGACTTTAGAAAGGTCGTGGCTTCCTTGAAGGAATATGAAGCCTTAAGAGAAAGGACTGCTAGTGGGGAACCTAATCCTGCTGGGCTTCATGATTCTGACTCTACTATTGATCCCGATGCAGTTGCTGCTATTCGCCGACAAAGACTTAGTGAAATATCCTTGTGGTTTAGTCCTCATAATCGTAATAACCATAACTATATGGCATTCTCACAGGTTCTTTCTGAACTGCCTCTGAGTTCTGCTACAGGAGAAGATGTTCCTGCTGAAAATGCAGCGACAAAGTGGGCTGTTGAATGTACTGGGATTCTTCTTGCGACAGGATTACTTACTGTTACTCTTGCTTGGCTCATAGCCCCTCATGTGGGAAAGAAAACAGCTAGCAGTGGTCTTCATATTCTTCTTGGAGGCATATGTGCTTTAACAGTTGTGGTTTTCTTTCGATTTTTTGTGCTGACCAGAATAAAATATGGACCGGCGAGATACTGGGCTATCCTTTTTGTCTTCTGGTTTCTTGTGTTTGGTATTTGGGCTTCACGAACACACAGTTCTCATACGACATGA 1053 41.98 MGKEDLLQSTNHSASDDCCSHNDVTESRDREARSATCRVCQCTESDKRGDAVLGFLGITLSESKTNKNVKLDSPLNAKSSPSKQNDGKGSSVVEFIGPDGEVFVCNADIETGSCLSQDELVELGCSCKNDLALVHYACALKWFISHGSTVCEICGCVAKNIRTADFRKVVASLKEYEALRERTASGEPNPAGLHDSDSTIDPDAVAAIRRQRLSEISLWFSPHNRNNHNYMAFSQVLSELPLSSATGEDVPAENAATKWAVECTGILLATGLLTVTLAWLIAPHVGKKTASSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSSHTT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36376864 36379200 - Bda007248.1 Bda10g00414 14302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00414 350 MobiDBLite consensus disorder prediction 70 91 - -
Bda10g00414 350 ProSiteProfiles Zinc finger RING-CH-type profile. 97 161 IPR011016 GO:0008270
Bda10g00414 350 SUPERFAMILY RING/U-box 117 157 - -
Bda10g00414 350 PANTHER ZINC FINGER, RING-CH-TYPE 19 349 - -
Bda10g00414 350 SMART ringv_2 114 155 IPR011016 GO:0008270
Bda10g00414 350 Pfam RING-variant domain 118 154 IPR011016 GO:0008270
Bda10g00414 350 MobiDBLite consensus disorder prediction 1 23 - -
Bda10g00414 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 158 IPR013083 -
Bda10g00414 350 MobiDBLite consensus disorder prediction 1 18 - -
Bda10g00414 350 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 349 - -
Bda10g00414 350 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00414 Bda-Chr10:36376864 Bda05g00947 Bda-Chr5:57993974 6.50E-09 dispersed
Bda10g00414 Bda-Chr10:36376864 Bda14g00275 Bda-Chr14:1858375 7.42E-11 transposed
Bda10g00414 Bda-Chr10:36376864 Bda15g00243 Bda-Chr15:5071312 7.10E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00414 - - pvy:116145684 484.952