Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00517 ATGGAAAAGAAAGGAAGTTGGTTTTGTGCAGTGACAAAAGCTCTCGGTTCTGAATCTAATGAAAAGAAAGATCAGAAAACCCAGAAAACAAAGAGAAAATGGTTTGGAAAGAATAAGAAAACGGATGTGATTACGTTTTTGGAAGAAACAACTCCACTGCCTCTTCCTTCGCCACTTCCAGCTCTAGAAAATGTGAAATTGACAAGTGTTGAGAATGAACAAAGCAAGCATGCCTACTCTGTGGCACTTGCCACCGCAGCGGCAACAGAGGCTGCTGTAGCGGCCGCTCAGGCAGCTGCCGAGGTTGTTCGTCTGACCACTATTCCTCGTTTTGTGGGAAAATCAAAAGACGAAATAGCAGCCATCAATATTCAAACAGCATTTCGTGGATATCTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTTGTGCGGTTGAAAATGTTGATGGAAGGGCCATCTGTAAAACGGCCAGTGGCTTCCTCGTTGAGAACCATGCAGAGACTTGCACGTTTGCAATCGCAGATTTGTTCGAGGAGGCTCAGAATGTCGGAGAAGAATCAGGCTCTTCAGCTTCAACTTCAGCGGAAACACGAAAAAGAATTTGCGAAATTAAGAGCTTCTATTGGTGAAGAATGGGATGCTAGAACACAGTCAAAGGAGCAAGTTGAAGCCAAAATACTCAACAAGCAAGAAGCTGTTTTGATAAGAGAAAGGGCTCTAGCATATGCTTTCTCTCATCAGTTACAGAGCTTTACTCTCATTTCTCCTTTTACCTGTCATCGTTTGAAGATAATATTTTTTAGACTTCTCGGGTCGGATCTAACCACTAATATATTGAACATGGCACAGTTGGAAGAACTCTTCGAAATCAGCTAA 879 43.12 MEKKGSWFCAVTKALGSESNEKKDQKTQKTKRKWFGKNKKTDVITFLEETTPLPLPSPLPALENVKLTSVENEQSKHAYSVALATAAATEAAVAAAQAAAEVVRLTTIPRFVGKSKDEIAAINIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRPVASSLRTMQRLARLQSQICSRRLRMSEKNQALQLQLQRKHEKEFAKLRASIGEEWDARTQSKEQVEAKILNKQEAVLIRERALAYAFSHQLQSFTLISPFTCHRLKIIFFRLLGSDLTTNILNMAQLEELFEIS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38714627 38715900 + Bda007391.1 Bda10g00517 14405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00517 292 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Bda10g00517 292 Gene3D - 28 143 - -
Bda10g00517 292 PANTHER IQ-DOMAIN 5-RELATED 1 253 - -
Bda10g00517 292 SMART iq_5 116 138 IPR000048 GO:0005515
Bda10g00517 292 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Bda10g00517 292 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00517 Bda-Chr10:38714627 Bda15g00176 Bda-Chr15:4321536 2.02E-123 dispersed
Bda10g00517 Bda-Chr10:38714627 Bda03g01731 Bda-Chr3:56756295 5.99E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00517 - - mnt:21397283 282.337