Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00517 ATGGAAAAGAAAGGAAGTTGGTTTTGTGCAGTGACAAAAGCTCTCGGTTCTGAATCTAATGAAAAGAAAGATCAGAAAACCCAGAAAACAAAGAGAAAATGGTTTGGAAAGAATAAGAAAACGGATGTGATTACGTTTTTGGAAGAAACAACTCCACTGCCTCTTCCTTCGCCACTTCCAGCTCTAGAAAATGTGAAATTGACAAGTGTTGAGAATGAACAAAGCAAGCATGCCTACTCTGTGGCACTTGCCACCGCAGCGGCAACAGAGGCTGCTGTAGCGGCCGCTCAGGCAGCTGCCGAGGTTGTTCGTCTGACCACTATTCCTCGTTTTGTGGGAAAATCAAAAGACGAAATAGCAGCCATCAATATTCAAACAGCATTTCGTGGATATCTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTTGTGCGGTTGAAAATGTTGATGGAAGGGCCATCTGTAAAACGGCCAGTGGCTTCCTCGTTGAGAACCATGCAGAGACTTGCACGTTTGCAATCGCAGATTTGTTCGAGGAGGCTCAGAATGTCGGAGAAGAATCAGGCTCTTCAGCTTCAACTTCAGCGGAAACACGAAAAAGAATTTGCGAAATTAAGAGCTTCTATTGGTGAAGAATGGGATGCTAGAACACAGTCAAAGGAGCAAGTTGAAGCCAAAATACTCAACAAGCAAGAAGCTGTTTTGATAAGAGAAAGGGCTCTAGCATATGCTTTCTCTCATCAGTTACAGAGCTTTACTCTCATTTCTCCTTTTACCTGTCATCGTTTGAAGATAATATTTTTTAGACTTCTCGGGTCGGATCTAACCACTAATATATTGAACATGGCACAGTTGGAAGAACTCTTCGAAATCAGCTAA 879 43.12 MEKKGSWFCAVTKALGSESNEKKDQKTQKTKRKWFGKNKKTDVITFLEETTPLPLPSPLPALENVKLTSVENEQSKHAYSVALATAAATEAAVAAAQAAAEVVRLTTIPRFVGKSKDEIAAINIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRPVASSLRTMQRLARLQSQICSRRLRMSEKNQALQLQLQRKHEKEFAKLRASIGEEWDARTQSKEQVEAKILNKQEAVLIRERALAYAFSHQLQSFTLISPFTCHRLKIIFFRLLGSDLTTNILNMAQLEELFEIS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38714627 38715900 + Bda007391.1 Bda10g00517 14405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00517 292 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Bda10g00517 292 Gene3D - 28 143 - -
Bda10g00517 292 PANTHER IQ-DOMAIN 5-RELATED 1 253 - -
Bda10g00517 292 SMART iq_5 116 138 IPR000048 GO:0005515
Bda10g00517 292 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Bda10g00517 292 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00517 - - - mnt:21397283 282.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00517 Bda-Chr10:38714627 Bda15g00176 Bda-Chr15:4321536 2.02E-123 dispersed
Bda10g00517 Bda-Chr10:38714627 Bda03g01731 Bda-Chr3:56756295 5.99E-73 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00176 . 1 458 IQD Protein Family AT3G52290 53.3 6.3e-95 344.7
Bda10g00517 . 6 248 IQD Protein Family AT3G52290 59.7 2.2e-55 213.4
Bda09g00275 . 1 418 IQD Protein Family AT3G22190 55.1 3.6e-95 345.5
Bda01g00627 . 1 395 IQD Protein Family AT2G26180 53.0 1.1e-91 334.0
Bda02g00019 . 1 274 IQD Protein Family AT2G33990 51.1 2.4e-60 229.2
Bda05g00781 . 2 162 IQD Protein Family AT2G33990 50.9 2.7e-40 162.5
Bda05g00781 . 1 173 IQD Protein Family AT3G15050 56.1 3.2e-49 192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00517 Bda_Chr10 FPKM 25.195539 28.069782 69.768517 70.526558 13.084537 13.570701 11.69234 67.481041 61.411522